MBAT Mouse All Hands Meeting 2007. What is included in MBAT 1.1 (existing features…) Visualization Tool –3D atlas –Brain Graph –Label, mask volume Query.

Slides:



Advertisements
Similar presentations
National Library of New Zealand Dave Thompson Resource Development Analyst Digital Initiatives Unit.
Advertisements

Interfacing processing and visualization tools: FIPS to Slicer3 and the QueryAtlas.
Welcome to Synergy 2013 Chip Casanave Data Access Worldwide.
CM143 Web Week 6 Links & Navigation CSS Styling & Mouseovers.
VIEWS / TSS Overview. End-to-end Air Quality Data and Decision Support VIEWS / TSS Vision Acquisition Import Unification Management Manipulation Retrieval.
Jeliot 3 Producing an Educationally Effective and Usable Tool for Learning, the Case of Jeliot Family Andrés Moreno García Niko Myller Department of Computer.
Towards a zoomable cell abstract cell natural coordinate system Data > D Protein Structures from PDB ? A IHGFBCDE > Images from scientific.
Horde A great product, proven production stable, however: Look and feel is not consistent with Plesk Different and unfamiliar interface Customization.
About QCTS Government owned tools
Intro to ArcMap Customization with Visual Basic  Create your own toolbars, buttons, interactive tools, and programs  Runs behind the scenes in ArcMap.
Tutorial 6 Using Form Tools and Creating Custom Forms
Using the Drupal Content Management Software (CMS) as a framework for OMICS/Imaging-based collaboration.
1 ArrayExpress and MAGE Jamboree II Ugis Sarkans, EBI.
NA-MIC National Alliance for Medical Image Computing Core 1b – Engineering End-user Platform Steve Pieper Isomics, Inc.
Atlas Interoperablity I & II: progress to date, requirements gathering Session I: 8:30 – 10am Session II: 10:15 – 12pm.
Susanne Hambrusch Division of Computing and Communication Foundations (CCF) CISE Directorate National Science Foundation June 28, 2012.
Customized cloud platform for computing on your terms !
XCEDE Use Cases: QueryAtlas & other scenarios to drive Web Services development 2008 NA-MIC summer project week (developing)
Information Worker Effective tools for the development of business insights Immediate productivity Flexible, consistent user access IT Management.
Data Evaluation. Overview A&D now offers a professional data evaluation package to complement our testing tools –We have partnered to supply the commercial.
Atlas Interoperability Session Ilya Zaslavsky, Willy Wong + Bill Bug + Heng Yuan.
BIRN Update Carl Kesselman Professor of Industrial and Systems Engineering Information Sciences Institute Fellow Viterbi School of Engineering University.
Extending the Game to the Web Aaron Lieberman. The Web Website as a feature area Why is it interesting? Implementation Results.
Enterprise Reporting Solution
Atlas Interoperablity I & II: progress to date, requirements gathering Session I: 8:30 – 10am Session II: 10:15 – 12pm.
Wikispaces Private Label for Higher Education. Unlimited wikis, unlimited pages, unlimited possibilities Popular use cases: Collaborative coursework E-portfolios.
The European Bioinformatics Institute MAGE-OM and ArrayExpress a brief introduction to the database model Helen Parkinson European Bioinformatics Institute.
BIRN Advantages in Morphometry  Standards for Data Management / Curation File Formats, Database Interfaces, User Interfaces  Uniform Acquisition and.
Problemsolving Problem Solving – 4 Stages Analysis Design Development Evaluate (ADDE) Note: In this unit Evaluate is not covered in depth.
A Brief Overview Andrew K. Bjerring President and CEO.
Things done in the name of science…. (and the even greater things to be done)
® Microsoft Access 2010 Tutorial 10 Automating Tasks with Macros.
Data Integration Progress. BIRN Data Integration Framework 2. Create conceptual links to a shared ontology 1. Create multimodal databases 3. Situate the.
BBN Technologies Copyright 2009 Slide 1 The S*QL Plugin for Cytoscape Visual Analytics on the Web of Linked Data Rusty (Robert J.) Bobrow Jeff Berliner,
2006 Mouse AHM Mapping 2D slices to 3D atlases - Application of the Digital Atlas Erh-Fang Lee Laboratory of NeuroImage UCLA.
What is an open source discover tool? is a standalone, open source software used as alternative interface to existing integrated library systems that may.
A collaborative tool for sequence annotation. Contact:
Introduction to caIntegrator caBIG ® Molecular Analysis Tools Knowledge Center April 3, 2011.
Creating Custom Reports
MBAT Programmers Meeting From MBAT to WOMBAT Web-based Ontology-based.
MBAT User Workflows View an Atlas Open Data Upload Data Run a Query –Search Data Further Examination Microarray Data Further Examination of 2D Data –Search.
Morphometry BIRN Semi-Automated Shape Analysis (SASHA) JHU (CIS): M. F. Beg, C. Ceritoglu, A. Kolasny, M. I. Miller, R. Yashinski MGH (NMR): B. Fischl;
Jorge Jovicich, Ph.D. Massachusetts General Hospital - Harvard Medical School Biomedical Informatics Research Network Overview Testbeds Morphometry BIRN.
Needs and Progress: Summary Flexible, powerful, modular atlas interface, and a query gateway to multiple types of data (GeneNetwork, Barlow, Smith, CCDB,
© SERG Reverse Engineering (REportal) REportal: Reverse Engineering Portal (reportal.cs.drexel.edu)
Collaborative Mouse BIRN tools for sharing and visualizing multimodal, multi-scale data.
Imaging Capacities The ability to collect imaging data from different sites The ability to share imaging data from different sites The ability to analyze.
CPSC 203 Introduction to Computers Lab 21 By Jie Gao.
MBAT Infrastructure Controversial remarks…. What is an atlas?  a set of 2D images or a 3D volume in a specified coordinate system with a set of spatially.
2007 Mouse All Hands Meeting BIRN Ontology Day Jeff Grethe & Bill Bug (BIRN OTF) - March 7th, 2007.
National Geospatial Enterprise Architecture N S D I National Spatial Data Infrastructure An Architectural Process Overview Presented by Eliot Christian.
Atlas Interoperablity I & II: progress to date, requirements gathering Session I: 8:30 – 10am Session II: 10:15 – 12pm.
Mouse BIRN AHM 2007 Mouse BIRN-related activities at NCMIR- UCSD & BIRN-CC: “What we did and what we will do. Mouse BIRN-related activities at NCMIR- UCSD.
Mouse Brain Atlasing: Progress & Plans Use case: identify genes at a given location, and cells expressing them; supporting workflows: data publication.
Overview 3D Slicer currently provides very basic technology for annotating images. This limits users in their ability to properly capture semantic information.
Biomedical Informatics Research Network The BIRN Architecture: An Overview Jeffrey S. Grethe, BIRN-CC 10/9/02 BIRN All Hands Meeting 2002.
Contributions to mouse BIRN tools and resources Maryann Martone and Mark Ellisman University of California, San Diego 2008.
All Hands Meeting 2005 BIRN-CC: Building, Maintaining and Maturing a National Information Infrastructure to Enable and Advance Biomedical Research.
Human Genetics Unit Managing The High-Throughput Gene Expression Dataflow in Eurexpress Lalit Kumar Yin Chen Duncan Davidson Richard Baldock.
Product Workshop We talk about the latest improvements made to Trapeze and review some of the tools and features we’ve been working on. Presented by Anthony.
Nucor Building Systems BIM WITH TEKLA 3D DIGITAL BUILDING INFORMATION MODELING.
The effort-saving, cost-cutting, low-overhead, cloud capture platform.
BCPSOne Test and Quizzes
University of Pittsburgh
Write out the form of the partial fraction decomposition of the expression. Do not determine the numerical values of the coefficients. {image} 1. {image}
14.7 Triple Integrals with Cylindrical and Spherical Coordinates
VIEWS / TSS Overview.
The Image The pixels in the image The mask The resulting image 255 X
Tutorial 10 Automating Tasks with Macros
Evaluate the integral {image}
Presentation transcript:

MBAT Mouse All Hands Meeting 2007

What is included in MBAT 1.1 (existing features…) Visualization Tool –3D atlas –Brain Graph –Label, mask volume Query Tool –Gene expression –CCDB image data Integrated Environment –Query multiple data sources –Load images from server like NeuroTerrain

Under development … Adopt Community Standard Environment –MAGE –XCEDE –BIRNLEX Build a solid infrastructure for adopting more diverse data set –2D, 3D, 4D images –AD, Schizophrenic, Longitudinal data –Embryonic, Quail, Human data

Upload/Query Plan …

Gene Expression Infrastructure

What’s next… Better interface –Easier, seamless navigation –Visual appearance –Fully adopt new upload criteria More robust –Incorporate full life cycle development –Faster queries –Tighten collaborative effort among developers of different institutions

Proposed Design …. Provided by Zai Chang