Semantic networks for improved access to biomedical databases Istituto di Linguistica Computazionale “Antonio Zampolli” CNR – Pisa Sassolini Eva, Cucurullo.

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Presentation transcript:

Semantic networks for improved access to biomedical databases Istituto di Linguistica Computazionale “Antonio Zampolli” CNR – Pisa Sassolini Eva, Cucurullo Sebastiana, Picchi Eugenio 1 GL14, 28 November 2012

 large amount of information available  several information sources  problematic exploitation of knowledge due to unstructured textual format Biomedical domain main features 2 GL14, 28 November 2012

 risk of proliferation of disorganized information, difficult to find and to interconnect  demand for tools that suggest a new modality of content access  Internet and in particular social networking tools allow to create networks of people sharing common interests State of the art 3 GL14, 28 November 2012

the project allowed to specialize an intelligent browsing system: "DBT-Faccette" SUBITO (Unique Social Network for Biomedical Innovation in Tuscany) 4 GL14, 28 November 2012

5 http :// subito. ifc. cnr. it / GL14, 28 November 2012

Project partners 6 GL14, 28 November 2012

 (GENERAL) development of a website and a database for the collection and correlation of information on public- private subjects operating in the medical, biomedical and pharmaceutical sector within the Tuscan regional area  (SPECIFIC) development of techniques for the extraction and classification of textual data in order to enable a more efficient browsing OBJECTIVES GL14, 28 November

Sources of abstracts 8 GL14, 28 November 2012  PubMed.gov  Espacenet.com  ClinicalTrials.gov

 Top-down: › the traditional search systems adopt a priori knowledge of the material, that can be combined to form user-defined keywords/ queries  Bottom-up: › the categorization systems allow the user to dynamically discover the concepts that are semantically relevant to a particular domain, and to carry out the search refinements on the basis of semantically related concepts, but virtually unknown Search approach 9 GL14, 28 November 2012

 labeling and textual analysis system as customization of the traditional faceted classification system  "auto-adaptive" categorization that allows for automatic reorganization of content on the basis of semantically relevant concepts  identification of the texts related to a given topic thanks to an automatically recognized terminological lexicon DBT-Faccette 10 GL14, 28 November 2012

Search example 11 GL14, 28 November 2012