National Biological Information Infrastructure (NBII) BioBot & IABIN BioBot Ben Wheeler USGS Biological Informatics Office January 23 rd, 2007.

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Presentation transcript:

National Biological Information Infrastructure (NBII) BioBot & IABIN BioBot Ben Wheeler USGS Biological Informatics Office January 23 rd, 2007

Discussion Topics… NBII BioBot Enhancements to NBII BioBot IABIN BioBot Features & Development

BioBot Features Simple single search box interface All relevant resources are returned regardless of format or location Tabbed interface allows for access to resources (Maps, Images, etc. ) Weighting of “trusted” sources & resources. NBII Biocomplexity Thesaurus supplements search terms

CSA/NBII Biocomplexity Thesaurus  Provides us with a common language to describe the scope and content of all resources in NBII system  Using a common language to characterize these resources facilitates their retrieval by users  Created as an NBII partnership with Cambridge Scientific Abstracts (CSA)  Five (5) existing thesauri combined into one Biocomplexity Thesaurus

Biocomplexity Thesaurus

 A scientifically credible and dynamic biological names thesaurus for North American species  Biological names are a common denominator that can be used to link data from many distributed sources and across disciplines -- from molecular biology and genetics to entire ecosystem-level studies.  The ITIS is the result of a partnership of federal agencies formed to satisfy a mutual needs for scientifically credible taxonomic information. Integrated Taxonomic Information Service

Catalogued Resources in Biobot Searching BioBot for “west nile virus”; “All” results displayed And weighting results

Geospatial Applications results

BioBot Enhancements Folder & sub-folder based view Taxonomic lookups User defined Views Customize folder names by Resource type, Source, etc.

IABIN BioBot Features Multi-lingual interface IABIN specific thesaurus IABIN look & feel Relevant IABIN content Access to IABIN TN content TOR announced – close February 15, 2007 Scheduled for release Summer 07

Questions, Comments, Ben Wheeler Mike Frame,