Principles of Plant Systematics II A Quick Review And Some Fun!

Slides:



Advertisements
Similar presentations
Classification & Phylogeny
Advertisements

Classification of Organisms
Introduction Classification Phylogeny Cladograms Quiz
Outgroups Outgroups are the most common method for rooting trees Outgroup criteria 1. “Outside” the group of study 2.Closely related enough to be informative.
Reading Phylogenetic Trees Gloria Rendon NCSA November, 2008.
 Species evolve with significantly different morphological and behavioural traits due to genetic drift and other selective pressures.  Example – Homologous.
BIO2093 – Phylogenetics Darren Soanes Phylogeny I.
Fig Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings Overview: Investigating the Tree of Life Phylogeny is the.
D.5: Phylogeny and Systematics. D.5.1: Outline Classification Called Systematics or classification –Based on common ancestry and natural relationships.
Systematics Study of the diversity of organisms to classify them and determine their evolutionary relationships Taxonomy: naming, identifying and classifying.
Chapter 20 Cladograms.
BIOE 109 Summer 2009 Lecture 4- Part II Phylogenetic Inference.
Classification and phylogeny
Phylogeny & The Tree of Life. Phylogeny  The evolutionary history of a species or group of species.
Systematics The study of biological diversity in an evolutionary context.
What Is Phylogeny? The evolutionary history of a group.
Pathways of Evolution.
 Read Chapter 4.  All living organisms are related to each other having descended from common ancestors.  Understanding the evolutionary relationships.
Systematics and the Phylogenetic Revolution Chapter 23.
Fixations along phylogenetic lineages. Phylogenetic reconstruction: a simplification of the evolutionary process.
What is a synapomorphy?. Terms systematics [taxonomy, phylogenetics] phylogeny/phylogenetic tree cladogram tips, branches, nodes homology apomorphy synapomorhy.
PHYLOGENY and SYSTEMATICS CHAPTER 25. VOCABULARY Phylogeny – evolutionary history of a species or related species Systematics – study of biological diversity.
Phylogenies Reconstructing the Past. The field of systematics Studies –the mechanisms of evolution evolutionary agents –the process of evolution speciation.
Phylogeny & the Tree of Life
PHYLOGENY AND THE TREE OF LIFE CH 26. I. Phylogenies show evolutionary relationships A. Binomial nomenclature: – Genus + species name Homo sapiens.
Principles of Plant Systematics
Cenancestor (aka LUCA or MRCA) can be placed using the echo remaining from the early expansion of the genetic code. reflects only a single cellular component.
 Organisms are grouped into clades  A clade is a group of species that includes an ancestral species and all of its descendants  Based on a new trait.
Systematics and Phylogenetics Ch. 23.1, 23.2, 23.4, 23.5, and 23.7.
Interpreting Cladograms
Phylogeny and Systematics Phylogeny Evolutionary history of a species of a group of related species Information used to construct phylogenies.
Lesson Overview Lesson Overview Modern Evolutionary Classification 18.2.
Phylogeny & Systematics The study of the diversity and relationships among organisms.
Section 2: Modern Systematics
Systematics and Phylogenetic Revolution
Reconstructing Evolutionary Trees
Phylogeny & the Tree of Life
Classification of Organisms
Phylogeny and the Tree of Life
Phylogenetics
Phylogenetics Scientists who study systematics are interested in phylogeny, or the ancestral relationships between species. Grouping organisms by similarity.
PHYLOGENY evolution means organisms are related
Section 2: Modern Systematics
Principles of Plant Systematics J&C pp
Cladistics (Ch. 22) Based on phylogenetics – an inferred reconstruction of evolutionary history.
Topics Need for systematics Applications of systematics
Systematics and the Phylogenetic Revolution
Warm-Up Contrast adaptive radiation vs. convergent evolution? Give an example of each. What is the correct sequence from the most comprehensive to least.
The Ribosomal “Tree of Life”
Warm-Up Contrast adaptive radiation vs. convergent evolution? Give an example of each. What is the correct sequence from the most comprehensive to least.
Principles of Plant Systematics II
Phylogeny and the Tree of Life
Phylogeny and the Tree of Life
Phylogeny and the Tree of Life
Phylogeny and the Tree of Life
18.2 Modern Systematics I. Traditional Systematics
PHYLOGENETIC CLASSIFICATION
Chapter 20 Phylogenetic Trees. Chapter 20 Phylogenetic Trees.
Reading Phylogenetic Trees
Warm-Up Contrast adaptive radiation vs. convergent evolution? Give an example of each. What is the correct sequence from the most comprehensive to least.
Phylogeny and Systematics (Part 6)
Lab3 – Vertebrate Phylogeny
Warm-Up Contrast adaptive radiation vs. convergent evolution? Give an example of each. What is the correct sequence from the most comprehensive to least.
The Great Clade Race 10/24/18.
Warm-Up Contrast adaptive radiation vs. convergent evolution? Give an example of each. What is the correct sequence from the most comprehensive to least.
Cladistics.
Interpreting Cladograms Notes
Phylogenetic Trees Vocab
10.4 How to Construct a Cladogram
The Ribosomal “Tree of Life”
Presentation transcript:

Principles of Plant Systematics II A Quick Review And Some Fun!

Monophyletic Group (= Clade) A group composed of an ancestor and all its descendants.

Synapomorphy Shared derived character state. Synapomorphies have arisen in a common ancestor and are present in all the members of a group though sometimes in modified form. Synapomorphies can be morphological, chemical, genetic, behavioral, etc.

Phylogenetic Tree (= Cladogram)

What Assumptions/Problems Are There in Cladistics? 1. Change in characteristics occurs in lineages over time. 2. Any group of organisms is related by descent from a common ancestor. 3. There is a bifurcating, or branching, pattern of lineage- splitting. (when a lineage splits, it divides into exactly two groups) 4. Changes occur in an orderly progression, i.e. ordered. (pg. 26 of J&C) 5. Jumps between lineages (hybrids) aren’t easily dealt with 6. If we assume “parsimony” we are sometimes fooled. 7. Reversals and Convergence (Homoplasy) difficult to deal with

Let’s Construct Our Own Phylogenetic Tree (Cladogram) Consider the following four plants that grow here locally in the Gila National Forest as representatives of their families: Urtica dioica (Stinging Nettle, Urticaceae) Ceanothus greggii (Desert Buckthorn, Rhamnaceae) Morus microphylla (Littleleaf Mulberry, Moraceae) Ulmus pumila (Siberian Elm, Ulmaceae)

Consider These Three Character States: Flower size: conspicuous, or inconspicuous Stamens: >5 & straight, or <5 & incurved Sap: Milky, or clear

Urtica dioica subsp. gracilis

Urtica dioica subsp. Gracilis Character states Flower: inconspicuous Stamens: 4, incurved Sap: at least somewhat milky

Ceanothus greggii

Ceanothus greggii Character states Flower: conspicuous Stamens: 5, straight Sap: clear

Morus microphylla

Morus microphylla Character states Flower: inconspicuous Stamens: 5, straight Sap: milky

Ulmus pumila

Ulmus pumila Character states Flower: inconspicuous Stamens: 5, straight Sap: clear

Construct a Matrix… Flower TypeStamen TypeSap Type Urtica gracilis Ceanothus greggii Morus microphylla Ulmus pumila

Construct a Matrix Flower typeStamen typeSap type Urtica gracilisinconspicuous4, incurvedmilky Ceanothus greggiiconspicuous5, straightclear Morus microphyllainconspicuous5, straightmilky Ulmus pumilainconspicuous5, straightclear

Make Your Network

Ceanothus greggii Ulmus pumila Morus microphylla Urtica dioica A B C D flower state type of sap stamens conspicuous inconspicious clear milky >5, straight <5, incurved

What Do You Need to Root the Network? You need an outgroup Outgroups are assumed to have separated from the ingroup lineage before the ingroup diversified; i.e., the ingroup members are more closely related to each other than they are to the outgroup. The point at which the outgroup attaches to a network is therefore determined as the root of the tree.

Add the the Outgroup Let’s use Rosa woodsii as a representative of the Rosaceae as the outgroup. Here are the character states of Rosa woodsii: Flower: conspicuous Stamens: >5 Sap: clear Now– root your network by attaching Rosa woodsii at the most appropriate spot.

Congrats! Meet the Rosales!

Reading for Wednesday: Morphology of Vegetative Structures: Judd and Campbell pp