Detecting Polymorphisms in Mouse Genome Phillip Tao Advisor: Eleazar Eskin Grad Student: Emrah Kostem.

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Detecting Polymorphisms in Mouse Genome Phillip Tao Advisor: Eleazar Eskin Grad Student: Emrah Kostem

Ruby on Rails Using Ruby on Rails to create web server MySQL to store data Display data gathered using BLAT

Pygr Python based tool for sequencing data Can compare two or more strains Tried using to find inversions Takes too long / too resource intensive

BLAT Similar in function to Pygr Significantly less memory intensive Will be used to find and map polymorphisms

Roadmap Significantly less progress than expected Web server mostly functional by January Winter quarter to map polymorphisms Spring quarter to use map of polymorphisms and predict phenotype

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