Role of the Bidomain Model of Cardiac Tissue in the Dynamics of Phase Singularities Jianfeng Lv and Sima Setayeshgar Department of Physics, Indiana University,

Slides:



Advertisements
Similar presentations
Spiral-wave Turbulence and its Control in Excitable Media like Cardiac Tissue Microsoft External Research Initiative.
Advertisements

Chapter 8 Elliptic Equation.
1 Computing the electrical activity in the human heart Aslak Tveito Glenn T. Lines, Joakim Sundnes, Bjørn Fredrik Nielsen, Per Grøttum, Xing Cai, and Kent.
Scroll waves meandering in a model of an excitable medium Presenter: Jianfeng Zhu Advisor: Mark Alber.
DETERMINATION OF UNSTEADY CONTAINER TEMPERATURES DURING FREEZING OF THREE-DIMENSIONAL ORGANS WITH CONSTRAINED THERMAL STRESSES Brian Dennis Aerospace Engineering.
Systems Biology talk July Systems Biology of the Heart Richard Clayton.
Cardiac Simulations with Sharp Boundaries Preliminary Report Shuai Xue, Hyunkyung Lim, James Glimm Stony Brook University.
Ionic Mechanisms of Propagation in Cardiac Tissue: Roles of the Sodium and L-type Calcium Currents During Reduced Excitability and Decreased Gap Junction.
Geometric Flows over Lie Groups Yaniv Gur and Nir Sochen Department of Applied Mathematics Tel-Aviv University, Israel HASSIP, September 2006, Munich.
Targets and Spirals in an Excitable BZ medium.
ECE602 BME I Partial Differential Equations in Biomedical Engineering (Cont’d)
How to Explain Why "Unequal Anisotropy Ratios" is Important Using Pictures but No Mathematics Bradley J. Roth Dept. Physics, Oakland University.
Spiral waves meandering in a model of an excitable medium Presenter: Mike Malatt Phil McNicholas Jianfeng Zhu.
Electrostriction Effects During Defibrillation by Michelle Fritz Oakland University SMaRT Program July 28, 2006.
Brookhaven Science Associates U.S. Department of Energy Neutrino Factory / Muon Collider Targetry Meeting May 1 - 2, Oxford, GB Target Simulations Roman.
Brookhaven Science Associates U.S. Department of Energy MUTAC Review March 16-17, 2006, FNAL, Batavia, IL Target Simulations Roman Samulyak Computational.
From Idealized to Fully- Realistic Geometrical modeling Scaling of Ventricular Turbulence Phase Singularities Numerical Implementation Model Construction.
Scaling of Ventricular Turbulence Phase Singularities Numerical Implementation Model Construction (cont.) Conclusions and Future Work  We have constructed.
A guide to modelling cardiac electrical activity in anatomically detailed ventricles By: faezeh heydari khabbaz.
Gating Modeling of Ion Channels Chu-Pin Lo ( 羅主斌 ) Department of Applied Mathematics Providence University 2010/01/12 (Workshop on Dynamics for Coupled.
Algebraic-Maclaurin-Padè Solutions to the Three-Dimensional Thin-Walled Spherical Inflation Model Applied to Intracranial Saccular Aneurysms. J. B. Collins.
Australian Journal of Basic and Applied Sciences, 5(11): , 2011 ISSN Monte Carlo Optimization to Solve a Two-Dimensional Inverse Heat.
Brookhaven Science Associates U.S. Department of Energy MUTAC Review January 14-15, 2003, FNAL Target Simulations Roman Samulyak Center for Data Intensive.
Heart Rhythms: Normal or Abnormal (Arrhythmias) Anatomy & Physiology L2 and L3.
Preventing Sudden Cardiac Death Rob Blake NA Seminar
Spiral and Scroll Waves in Excitable Media: Cardiological Applications A Calculus III Honors Project by David Hausner And Katrina McAlpin.
Transport Through the Myocardium of Pharmocokinetic Agents Placed in the Pericardial Sac: Insights From Physical Modeling Xianfeng Song, Department of.
Akram Bitar and Larry Manevitz Department of Computer Science
Engineering Analysis – Computational Fluid Dynamics –
The Role of the Bidomain Model of Cardiac Tissue in the Dynamics of Phase Singularities Jianfeng Lv and Sima Setayeshgar Department of Physics, Indiana.
Physics of the Heart: From the macroscopic to the microscopic Xianfeng Song Advisor: Sima Setayeshgar January 9, 2007.
Role of the Bidomain Model of Cardiac Tissue in the Dynamics of Phase Singularities Jianfeng Lv and Sima Setayeshgar Department of Physics, Indiana University,
The role of the bidomain model of cardiac tissue in the dynamics of phase singularities Jianfeng Lv and Sima Setayeshgar Department of Physics, Indiana.
Result Mathematical Modeling The key processes  Substrate transport across boundary layer between pericardial sac and myocardium, described by the parameter.
Role of the Bidomain Model of Cardiac Tissue in the Dynamics of Phase Singularities Jianfeng Lv and Sima Setayeshgar Department of Physics, Indiana University,
Advisor: Sima Setayeshgar
Numerical Implementation Diffusion Tensor Governing Equations From Idealized to Fully- Realistic Geometrical modeling Phase Singularities Model Construction.
Numerical Results Mathematical Modeling Key Biophysical Processes Substrate transport across boundary layer between pericardial sac and myocardium, described.
Result Mathematical Modeling The key processes  Substrate transport across boundary layer between pericardial sac and myocardium, described by the parameter.
Electrical Wave Propagation in a Minimally Realistic Fiber Architecture Model of the Left Ventricle Xianfeng Song, Department of Physics, Indiana University.
Electrical Wave Propagation in a Minimally Realistic Fiber Architecture Model of the Left Ventricle Xianfeng Song, Department of Physics, Indiana University.
Electrical Wave Propagation in a Minimally Realistic Fiber Architecture Model of the Left Ventricle Xianfeng Song, Department of Physics, Indiana University.
Collaboration with Craig Henriquez’ laboratory at Duke University Multi-scale Electro- physiological Modeling.
Electrical Wave Propagation in a Minimally Realistic Fiber Architecture Model of the Left Ventricle Xianfeng Song, Department of Physics, Indiana University.
Transport of Pharmocokinetic Agents in the Myocardium Xianfeng Song, Department of Physics, IUB Keith L. March, IUPUI Medical School Sima Setayeshgar,
Department of Mathematics Numerical Solutions to Partial Differential Equations Ch 12. Applied mathematics. Korea University.
Electrical Wave Propagation in a Minimally Realistic Fiber Architecture Model of the Left Ventricle Xianfeng Song, Department of Physics, Indiana University.
The Role of the Bidomain Model of Cardiac Tissue in the Dynamics of Phase Singularities Jianfeng Lv and Sima Setayeshgar Department of Physics, Indiana.
Finite Element Modelling of the dipole source in EEG
Microstructure Imaging Sequence Simulation Toolbox
I- Computational Fluid Dynamics (CFD-I)
Christopher Crawford PHY
Break-up (>= 2 filaments)
Mathematical modeling of cryogenic processes in biotissues and optimization of the cryosurgery operations N. A. Kudryashov, K. E. Shilnikov National Research.
C. F. Panagiotou and Y. Hasegawa
Volume 99, Issue 10, Pages (November 2010)
CHAPTER OBJECTIVES The primary objective of this chapter is to show how to compute the matrix inverse and to illustrate how it can be.
Break-up (>= 2 filaments)
Xianfeng Song, Department of Physics, Indiana University
Xianfeng Song[1], Keith L. March[2], Sima Setayeshgar[1]
Volume 99, Issue 10, Pages (November 2010)
Xianfeng Song[1], Keith L. March[2], Sima Setayeshgar[1]
W.F. Witkowksi, et al., Nature 392, 78 (1998)
Break-up (>= 2 filaments)
Break-up (>= 2 filaments)
Comparison of CFEM and DG methods
Transport of Pharmocokinetic Agents in the Myocardium
Break-up (>= 2 filaments)
Why Is Alternans Indeterminate?
Akram Bitar and Larry Manevitz Department of Computer Science
Presentation transcript:

Role of the Bidomain Model of Cardiac Tissue in the Dynamics of Phase Singularities Jianfeng Lv and Sima Setayeshgar Department of Physics, Indiana University, Bloomington, Indiana Motivation Patch size: 5 cm x 5 cm Time spacing: 5 msec [1] W.F. Witkowksi, et al., Nature 392, 78 (1998) Bidomain Model of Cardiac Tissue Spiral Waves and Cardiac Arrhythmias Transition from ventricular tachychardia to fibrillation is conjectured to occur as a result of breakdown of a single spiral (scroll) into a spatiotemporally disordered state, resulting from various mechanisms of spiral (scroll) wave instability. [2] Tachychardia Fibrillation Courtesty of Sasha Panfilov, University of Utrecht Transmembrane potential propagation : capacitance per unit area of membrane : transmembrane potential : intra- (extra-) cellular potential : transmembrane current : conductivity tensor in intra- (extra-) cellular space Governing equations describing the intra- and extracellular potentials: Ionic current,, described by a FitzHugh-Nagumo-like kinetics [9] [9] A. V. Panfilov and J. P. Keener, Physica D 84, (1995) The ratios of the diffusion constants along and perpendicular to the fiber direction in the intra- and extra-cellular spaces are different. Bidomain: Numerical Implementation Numerical solution of parabolic PDE (for u m ) Forward Euler scheme: Crank-Nicolson scheme: is approximated by the finite difference matrix operator, Numerical solution of elliptic PDE (for u e ) Direct solution of the resulting systems of linear algebraic equations by LU decomposition. Numerical Results Conclusions From Laboortatory of Living State Physics, Vanderbilt University The bidomain model treats the complex microstructure of cardiac tissue as a two- phase conducting medium, where every point in space is composed of both intra- and extracellular spaces and both conductivity tensors are specified at each point. [3-5] [3] J. P. Keener and J. Sneyd, Mathematical Physiology [4] C. S. Henriquez, Critical Reviews in Biomedical Engineering 21, 1-77 (1993) [5] J. C. Neu and W. Krassowska, Critical Reviews in Biomedical Engineering 21, (1993) [6] B. J. Roth and J. P. Wikswo, IEEE Transactions on Biomedical Engineering 41, (1994) [7] J. P. Wikswo, et al., Biophysical Journal 69, (1995) [8] J. P. Keener and K. Bogar, Chaos 8, (1998) Governing Equations Conservation of total current Elements a i, b i, c i … are constants obtained in finite difference approximation to the elliptic equation. Index re-ordering to reduce size of band-diagonal system Comparison of break-up in bidomain and monodomain models: Future Work Acknowledgements Ventricular fibrillation (VF) is the main cause of sudden cardiac death in industrialized nations, accounting for 1 out of 10 deaths. Strong experimental evidence suggests that self-sustained waves of electrical wave activity in cardiac tissue are related to fatal arrhythmias. And … the heart is an interesting arena for applying the ideas of pattern formation. Example of filament-finding results used to characterize breakup ( ): Rectangular grid: 60 x 60 x 9; dx=0.5 mm, dy=0.5 mm, dz=0.5 mm; dt=0.01s We acknowledge support from the National Science Foundation and Indiana University. We thank Xianfeng Song in our group for helpful advice on various aspects of the numerical implementation. Conductivity Tensors Focus of This Work Computational study of the role of the rotating anisotropy of cardiac tissue on the dynamics of phase singularities in the bidomain model of cardiac tissue. Time (s) Filament number Time (s) Filament length(grid points) Goal is to use analytical and numerical tools to study the dynamics of reentrant waves in the heart on physiologically realistic domains. Rotating Anisotropy Time (s) Filament number Time (s) Filament length(grid points) We have numerically implemented electrical wave propagation in the bidomain model of cardiac tissue in the presence of rotating anisotropy using FHN-like reaction kinetics. Preliminary numerical results indicate that in the bidomain model, scroll wave breakup is more sensitive to the anisotropy ratio than the fiber rotation rate, in contrast with the monodomain model. Cardiac tissue is more accurately described as a three-dimensional anisotropic bidomain, especially under conditions of applied external current such as in defibrillation studies. [6-7] However, unlike the monodomain, analytical and numerical studies based on the bidomain model remain technically challenging. [8] Dissection results indicate that cardiac fibers are arranged in surfaces, where fibers are approximately parallel in each surface while the mean fiber angle rotates from the outer (epicardium) to inner (endocardium) wall. The intracellular and extracellular conductivity tensors are proportional. Monodomain: [4] A. V. Panfilov, Chaos 8, (1998)