Chemokine RANTES –403 G/A polymorphism in two Slavonic populations with myocardial infarction Tereshchenko IP 1,2, Petrkova J 2,3, Mrazek F 2, Navratilova.

Slides:



Advertisements
Similar presentations
How would you explain the smoking paradox. Smokers fair better after an infarction in hospital than non-smokers. This apparently disagrees with the view.
Advertisements

ASSOCIATION OF HLA-C*06 WITH SUSCEPTIBILITY TO PSORIATIC ARTHRITIS AND ITS CLINICAL PHENOTYPE IN ROMANIA O. M. Popa1, L. Popa2, M. I. Dutescu3, M. Bojinca4,
Pavel Tarlykov, PhD General Genetics LTD Astana, Kazakhstan Raleigh, 2014.
ASSOCIATION OF MCP-1/CCL2 GENE POLYMORPHISM WITH ACUTE GRAFT VERSUS HOST DISEASE AFTER ALLOGENEIC HAEMATOPOIETIC STEM CELL TRANSPLANTATION Z. Ambruzova.
Single nucleotide polymorphisms in genes for cytokines interleukin (IL)-2, IL-6 and TNFalpha influence severity of osteolysis after total hip arthroplasty.
AS 737 Categorical Data Analysis For Multivariate
Promoter polymorphism of macrophage Migration Inhibitory Factor (MIF) gene in Czech and Russian patients with myocardial infarction Promoter polymorphism.
Evidence-Based Medicine 3 More Knowledge and Skills for Critical Reading Karen E. Schetzina, MD, MPH.
Association study of 5-HT2A genes with schizophrenia in the Malaysian population: A Multiethnic Meta- analysis Study Shiau Foon Tee* 1, Tze Jen Chow 1,
Chapter 7 Population Genetics. Introduction Genes act on individuals and flow through families. The forces that determine gene frequencies act at the.
#735 KA Lichtenstein 1, C Armon 2, K Buchacz 3, AC Moorman 3, KC Wood 2, JT Brooks 3, and the HOPS Investigators 1 University of Colorado Health Sciences.
Biology 101 DNA: elegant simplicity A molecule consisting of two strands that wrap around each other to form a “twisted ladder” shape, with the.
Prospective Evaluation of B-type Natriuretic Peptide Concentrations and the Risk of Type 2 Diabetes in Women B.M. Everett, N. Cook, D.I. Chasman, M.C.
Contingency tables Brian Healy, PhD. Types of analysis-independent samples OutcomeExplanatoryAnalysis ContinuousDichotomous t-test, Wilcoxon test ContinuousCategorical.
Two RANTES gene polymorphisms and their haplotypes in patients with myocardial infarction from two Slavonic populations Two RANTES gene polymorphisms and.
Complement Factor H Polymorphism in Age- Related Macular Degeneration* *Klein RJ, et al. Science. 2005; 308:
Melanie Dunn 9/20/2011.  Rheumatoid arthritis (RA) is a chronic disease that leads to inflammation of the joints and surrounding tissues that can also.
Circulating Long-Chain ω-3 Fatty Acids and Incidence of Congestive Heart Failure in Older Adults: The Cardiovascular Health Study Funded by: National Institutes.
EGEE-III INFSO-RI Enabling Grids for E-sciencE EGEE and gLite are registered trademarks Genome Wide Haplotype analyses of human.
Polymorphisms in the CRP and C1 Q genes and schizophrenia in Armenian population: A pilot study Zakharyan R 1,2, Khoyetsyan A 1, Chavushyan A 1, Arakelyan.
Supported by Czech Govt. Funding MSM
More Contingency Tables & Paired Categorical Data Lecture 8.
Supplementary Table 1.
Copyright © 2013, 2009, and 2007, Pearson Education, Inc. Chapter 10 Comparing Two Groups Section 10.1 Categorical Response: Comparing Two Proportions.
Association of functional polymorphisms of Bax and Bcl2 genes with schizophrenia Kristina Pirumya, PhD, Laboratory of Human Genomics and Immunomics Institute.
FUNCTIONAL VARIANT OF THE ANXA11 GENE: TRUE MARKER OF PROTECTION AND CANDIDATE DISEASE MODIFIER IN SARCOIDOSIS Stahelova A 1, Mrazek F 1, Kriegova E 1,
Thank You This PowerPoint document contains the images that you requested. Copyright Notice All Online Service materials, including, without limitation,
Chi square and Hardy-Weinberg
Schematic of the single variant polymorphism (SNP) genotyping assay.
GENETIC MARKERS OF CORONARY ARTERY DISEASE RISK GALYA ATANASOVA MD, PhD DOMINIC JAMES.
Copyright © 2013, 2009, and 2007, Pearson Education, Inc. Chapter 10 Comparing Two Groups Section 10.3 Other Ways of Comparing Means and Comparing Proportions.
Date of download: 5/27/2016 Copyright © The American College of Cardiology. All rights reserved. From: Causal Assessment of Serum Urate Levels in Cardiometabolic.
SCANNING OF CANDIDATE GENES FOR THE SUSCEPTIBILITY OF KAWASAKI DISEASE IN THE HLA REGION Lee JK, Kim JJ, Kim S, Choi IH, Kim KJ, Hong SJ, Seo EJ, Yoo HW,
Date of download: 6/22/2016 Copyright © The American College of Cardiology. All rights reserved. From: Association Between the Chromosome 9p21 Locus and.
Correlation of Glu298Asp eNOS Polymorphism with Serum NO Levels in Egyptian Coronary Artery Disease Patients Sahar Abdel-Maksoud, Sally Ibrahim, Feeby.
Conclusions: Results : Methods: We prospectively recruited 50 women with recurrent pregnancy loss mean age 33.0 (±5.4) years and 30 healthy controls mean.
Date of download: 11/12/2016 Copyright © 2016 American Medical Association. All rights reserved. From: Association of Apolipoprotein E Genotypes With Lipid.
Student of Cellular and Molecular biology
World Congress of Cardiology Scientific Sessions, 2014; Melbourne, Australia, 4-7 May 2014 PW 109 RATIO OF PROINFLAMMATORY AND ANTIINFLAMMATORY ​​FACTORS.
Peng Yin1, Andrea L Jorgensen1, Andrew P Morris1, Richard Turner2, Richard Fitzgerald2, Rod Stables3, Anita Hanson2, Munir Pirmohamed2 1. Department of.
Analysis of the composite 5-HTTLPR/rs25531 polymorphism in premenstrual dysphoric disorder Conclusion These data do not support a major role for rs25531or.
Genetics of common complex diseases: a view from Iceland
Copyright © 2004 American Medical Association. All rights reserved.
A pilot study of Vitamin D Receptor TaqI and ApaI Gene Variants in adult asthma Katrina Hutchinson MD Senior Clinical Biochemist at Biomnis Ireland School.
1 GENETIC POLYMORPHISMS FROM CHRONIC OBSTRUCTIVE PULMONARY DISEASE GENOME-WIDE ASSOCIATION STUDIES IN ALPHA-1 ANTITRYPSIN DEFICIENCY H Khiroya, PR Newby,
Association between -174G/C promoter polymorphism of the Interleukin-6 gene and ischemic stroke: A meta-analysis Pradeep Kumar, Amit Kumar, Ram Sagar,
Cardiometabolic effects of genetic upregulation of the interleukin 1 receptor antagonist: a Mendelian randomisation analysis    The Lancet Diabetes &
Investigating Polymorphisms in the NADSYN1/DHCR7 Locus (rs and rs ) as Novel Genetic Markers for Cardiovascular Disease Sally I. Hassanein,
ERS SILVER sponsorship
ASSOCIATIONS BETWEEN ANXA11 RS C/T, BTNL2 RS G/A, HLA CLASS I AND II POLYMORPHISMS AND SARCOIDOSIS EVOLUTION Manuel Vaz1, Bruno Lima2, Natália.
What should be in your SNPedia write-up?
Come my friend. Let’s forget the cares of tomorrow
Introduction to bioinformatics lecture 11 SNP by Ms.Shumaila Azam
Selection of candidate genes Hypothesis and objective
Early Invasive Versus Initial Conservative Strategies for Women with Non–ST-Elevation Acute Coronary Syndromes: A Nationwide Analysis  Islam Y. Elgendy,
Cardiometabolic effects of genetic upregulation of the interleukin 1 receptor antagonist: a Mendelian randomisation analysis    The Lancet Diabetes &
Todd A. Lee, PharmD, PhD, Brian Bartle, MPH, Kevin B. Weiss, MD, MPH 
“LOSS OF FUNCTION” POLYMORPHISMS OF THE P2RX7 GENE AND PERIPROSTHETIC OSTEOLYSIS AFTER TOTAL HIP ARTHROPLASTY: A PILOT STUDY. Petřek M1, Mrázek F1 ,
Figure 2 Association between coronary artery disease polygenic risk score and the presence of migraine Results are given as odds ratios with 95% confidence.
Elliott P, et al. JAMA 2009;302:37-48.
Figure 1 Overall lag-cumulative exposure–response relationships between air temperature and myocardial infarction ... Figure 1 Overall lag-cumulative exposure–response.
David J.A. Jenkins et al. JACC 2018;71:
A Flexible Bayesian Framework for Modeling Haplotype Association with Disease, Allowing for Dominance Effects of the Underlying Causative Variants  Andrew.
Identification of a genetic variant associated with abdominal aortic aneurysms on chromosome 3p12.3 by genome wide association  James R. Elmore, MD, Melissa.
Amélie Bonnefond, Philippe Froguel  Cell Metabolism 
Table 2 Rs number, gene, OR, 95% CI, and permutation p value for the statistical significant variants resulted from allelic association analysis association.
Study Flow Diagram Thompson A, et al. JAMA 2008;299:
The principles of genetic association
Are Variants in the CAPN10 Gene Related to Risk of Type 2 Diabetes
Genetic predisposition to CHD modifies the increased CHD risk associated with smoking (*) ORs adjusted for age, gender, total energy intake, alcohol intake,
Presentation transcript:

Chemokine RANTES –403 G/A polymorphism in two Slavonic populations with myocardial infarction Tereshchenko IP 1,2, Petrkova J 2,3, Mrazek F 2, Navratilova Z 2, Lukl J 3, Voevoda MI 1, Petrek M 2 1 Institute of Internal Medicine, RAMS Novosibirsk, Russia; 2 Immunogenetics and 3 Internal Medicine I, Palacky University Olomouc, Czech Republic (The study was supported by Czech government (ME-856). I.T. is recipient of Visegrad fund fellowship)

Atherosclerosis & Inflammation & Genetics Inflammation of coronary artery wall is a critical process in the pathogenesis of myocardial infarction (MI). MI is thought to have important genetic component. The chemokine RANTES/CCL5 activates and attracts T-lymphocytes to the sites of ongoing inflammation. RANTES gene is a candidate for MI susceptibility.

RANTES variants & Myocardial Infarction A single nucleotide polymorphism SNP locates at the position -403 of the RANTES gene promoter (Guanin by Adenin -403 G→A) RANTES-403*A allele tended to associate with a higher risk of coronary artery disease (CAD) in Hungarian patients (Szalai et al. Atherosclerosis 2001;158:233-39). In a LURIC (The Ludwigshafen Risk and Cardiovascular health) study in German population RANTES 403*A allele was significantly associated with CAD (Simeoni et al. European Heart Journal 2004; 25, )

AIMS To investigate whether RANTES promoter -403 G→A polymorphism is associated with myocardial infarction in the two Caucasian population (Czech, West- Slavonic; Russian, East-Slavonic) In this case-control study to replicate the Hungarian and German studies in other populations.

Study population Diagnosis of myocardial infarction was made according to standard international criteria. (Eur Heart J. 2000;21:1502) Slavonic population West-Slavonic Czech 224 patients with MI 140 unrelated healthy controls East-Slavonic Russian 244 patients with MI 197 unrelated healthy controls

RANTES promoter polymorphism genotyping and statistical analysis RANTES -403 G/A polymorphism was genotyped by polymerase chain reaction with sequence specific primers (PCR-SSP) Statistic:A statistical calculations were performed using the SPSS v.13.0 (SPSS Inc, Chicago, IL) The distribution of the RANTES genotypes and alleles were analyzed using the Pearson’s 2x2 contingency table  2 -test and odds ratios and 95% confidence interval (CI) were estimated. The control populations was tested for conformity to the Hardy-Weinberg equilibrium.

RESULTS There were no significant differences in RANTES -403 G/A genotype, allelic and phenotype (carriage) frequencies between MI patients and controls for both populations (Table 1) No differences after subgroup analysis (male / female and age at 1 st MI episode) was found. The proportion of RANTES-403*A allele was similar in control groups across several Caucasian populations (Figure 1)

Table 1: Genotype, allele and phenotype (carriage rates) frequencies of the RANTES -403 G/A polymorphism in the groups of patients with myocardial infarction and control subjects (in two investigated population) RANTES -403 G/A Czech population (N=364)Russian population(N=441) MI (N=224) Control (N=140) MI (N=244) Control (N=197) Genotype % GG GA AA a a Alleles % G A b b A allele carriage % A c c a p value for genotype: Czech – 0.75, Russian – 0.48; b p value for alleles: Czech – 0.49, Russian – 0.27; c p value for A allele carriage: Czech – 0.45, Russian – 0.46.

Figure 1: Proportions of RANTES -403*A allele in patient with coronary artery disease and control groups across selected populations Czech republic, Olomouc; Russian Federation (RF), Novosibirsk: myocardial infarction, data of present study. Germany:coronary atherosclerosis, Simeoni et al.,Eur Heart J.,2004;25:1438. Hungary:coronary atherosclerosis, Szalai et al., Atherosclerosis.2001;158:233.

DISCUSSION The population size of Hungary cohort (Szalai et al,2001) and our investigated two Slavonic population was identical. However, genotype and alleles frequencies RANTES G-403*A distributed not equally between two populations. Distribution of genotypes in LURIC study deviated significantly from the expected in Hardy-Weinberg equilibrium. In this study were performed statistical tests that do not assume HWE and RANTES -403*A allele was significantly associated with CAD (Simeoni et al., 2004). Our estimated groups are limits for the numbers of participants but populations were strong compliance with the HWE. Thus, technical genotyping errors are not the cause for present discrepancies. Our pilot study, performed in cases and controls of Slavonic ethnic origin, did not confirm this findings.

CONCLUSION The data do not support association between RANTES -403*A allele and MI as reported from LURIC (LUdwigshafen Risk and Cardiovascular health) and Hungarian cohort At least in Slavonic population, RANTES promoter -403 G/A polymorphism does not contribute to genetic determination of MI.