MS3557 Phosphorylation sites identification of eEF1A in yeast Biological Mass Spectrometry Facility.

Slides:



Advertisements
Similar presentations
Control St Control St Control St 3 dai 7 dai 11 dai Protein extraction Tryptic digestion and TMT six-plex labeling Phosphopeptides enrichment by TiO 2.
Advertisements

Protein Quantitation II: Multiple Reaction Monitoring
From Genome to Proteome Juang RH (2004) BCbasics Systems Biology, Integrated Biology.
Proteomics Informatics – Protein characterization I: post-translational modifications (Week 10)
Experiment was performed on 293 cells, details are presented in publication: Adenoviral E4 gene stimulates secretion of PEDF that maintains long-term survival.
UC Mass Spectrometry Facility & Protein Characterization for Proteomics Core Proteomics Capabilities: Examples of Protein ID and Analysis of Modified Proteins.
Mass Spectrometry Week 2 Lab S117 Fall Overview Post-Lab: Percent Alcohol in Wine – TurnItIn.com – Working with data sets – Analyzing data sets.
Characterization of Recombinant Glycoprotein by Mass Spectrometry Min Xie Spring, 2001.
Mass Fingerprint. Protease A protease is any enzyme that conducts proteolysis, that is, begins protein catabolism by hydrolysis of the peptide bonds that.
Comparison of serum proteomics analysis using in-silico and in-gel fractionation Anna Drabik, Anna Bodzoń-Kułakowska, Piotr Suder, Marek Sierzęga, Jan.
Pox Proteomics: Identification of the Proteins Associated with the Membranous Fraction of Vaccinia Virus Cliff Gagnier Dr. Dennis Hruby Department of Microbiology.
Systematic Identification of Protein Domains for Structure Determination Ming Luo, Ph.D. University of Alabama at Birmingham March 29, 2004 NIH.
20-30% of a trypsinised proteome are constituted of peptides with Mw≥3000 (TReP) Identification of large peptides by shotgun MS is not efficient Isolation.
Proteomics Informatics – Protein identification II: search engines and protein sequence databases (Week 5)
Announcements: Proposal resubmissions are due 4/23. It is recommended that students set up a meeting to discuss modifications for the final step of the.
Previous Lecture: Regression and Correlation
De Novo Sequencing of MS Spectra
FIGURE 5. Plot of peptide charge state ratios. Quality Control Concept Figure 6 shows a concept for the implementation of quality control as system suitability.
Proteomics Informatics (BMSC-GA 4437) Course Director David Fenyö Contact information
Proteomics Informatics (BMSC-GA 4437) Course Director David Fenyö Contact information
Proteomics Informatics Workshop Part II: Protein Characterization David Fenyö February 18, 2011 Top-down/bottom-up proteomics Post-translational modifications.
Mueller LN, Brusniak MY, Mani DR, Aebersold R
Introduction : Standard methodologies for enzymatic digestions have changed little in the past 40 years. The same process for sample incubation with trypsin,
Introduction to 2D LC- MS/MS (Yuanming Luo) Institute of Microbiology Chinese Academy of Sciences.
Yin-Yang Column for Global Protein Identification Column Technology Inc.
Introduction The GPM project (The Global Proteome Machine Organization) Salvador Martínez de Bartolomé Bioinformatics support –
The complete table (available upon request) lists the phosphoproteins identified in RAW cells from multiple experiments. The table contains 3 classes.
Additional file 1 1.1Workflow of large-scale proteomic analysis of normal human kidney glomerulus 1.2Detailed procedure of LC-MS/MS analysis Additional.
Phosphopeptides identification Column technology Inc.,
Peptide Identification via Tandem Mass Spectrometry Sorin Istrail.
Overview of Mass Spectrometry
A New Strategy of Protein Identification in Proteomics Xinmin Yin CS Dept. Ball State Univ.
Proteomics Informatics (BMSC-GA 4437) Instructor David Fenyö Contact information
Click to add Text Sample Preparation for Mass Spectrometry Sermin Tetik, PhD Marmara University July 2015, New Orleans.
Mascot Example Slides. MS/MS Database Search Example Data: BSAonespectra.mgf (one spectra) Database: bovine Fixed modifications: Carboxymethyl(C )
Proteomics Informatics (BMSC-GA 4437) Course Directors David Fenyö Kelly Ruggles Beatrix Ueberheide Contact information
$200 $400 $600 $800 $1000 $200 $400 $600 $800 $1000 $200 $400 $600 $800 $1000 $200 $400 $600 $800 $1000 $200 $400 $600 $800 $1000 $200.
Identify proteins. Proteomic workflow Trypsin A typical sample We add a solution of 50 mM NH 4 HCO 3 (pH 7.8) containing trypsin ( µg/µl). Volume.
Post translational modification n- acetylation Peptide Mass Fingerprinting (PMF) is an analytical technique for identifying unknown protein. Proteins to.
B. Neutral loss triggered MS3 scan of 983.1, 2+
Ming Luo, Ph.D. University of Alabama at Birmingham March 29, 2004 NIH
Instrumental Chemistry
Bioinformatics Solutions Inc.
Principle for quantification of phosphorylation of the C-terminal tail of AtPIP2;1. Principle for quantification of phosphorylation of the C-terminal tail.
Identification of DJ-1/PARK-7 as a determinant of stroma-dependent and TNF-α–induced apoptosis in MDS using mass spectrometry and phosphopeptide analysis.
Mapping Sites of O-GlcNAc Modification Using Affinity Tags for Serine and Threonine Post-translational Modifications Wells, Vosseller, Cole, Cronshaw,
Interpretation of Mass Spectra I
Quantitative mass spectrometry of proteasome pulldowns
An Augmented Multiple-Protease-Based Human Phosphopeptide Atlas
Volume 31, Issue 3, Pages (August 2008)
مديريت موثر جلسات Running a Meeting that Works
A quantitative proteomics strategy to identify SUMO-conjugated proteins. A quantitative proteomics strategy to identify SUMO-conjugated proteins. HeLa.
Work flow for the LAXIC strategy to quantify the phosphorylation change in response to osmotic stress. Work flow for the LAXIC strategy to quantify the.
Overview of the analytical workflow used in this study and a representative MS/MS spectrum.a, Overview of the analytical workflow used in this study. Overview.
Shotgun Proteomics in Neuroscience
GSK-3 phosphorylates nSREBP-1c and nSREBP-1a proteins in vitro
A quantitative phosphoproteomic approach for the identification of cellular CDKL5 targets A quantitative phosphoproteomic approach for the identification.
C.2.10 Sample Questions.
Regulation of Raf-1 by Direct Feedback Phosphorylation
C.2.8 Sample Questions.
SDS-PAGE of IGFBP-5 from 32P-labeled T47D cells and separation of tryptic phosphopeptides separated by HPLC.a, an autoradiograph (lane 1) is shown next.
C.2.8 Sample Questions.
Identification of Post Translational Modifications
Interpretation of Mass Spectra
Silver-stained gel showing the major tyrosine-phosphorylated proteins in podocytes. Silver-stained gel showing the major tyrosine-phosphorylated proteins.
The B. thetaiotaomicron OMV pellet (OMVp) protein content is different from that of the OM. Three hundred micrograms of each preparation and biological.
MS3 for peptide identification and mapping phosphorylation sites
General schematic for MS analysis of ionized microbiological isolates and clinical material. General schematic for MS analysis of ionized microbiological.
Phosphorylated tyrosine residues in FGFR3, FGFR3(K650E), FGFR3-TACC3, and FGFR3(K650E)-TACC3 identified by mass spectrometry analysis. Phosphorylated tyrosine.
Presentation transcript:

MS3557 Phosphorylation sites identification of eEF1A in yeast Biological Mass Spectrometry Facility

Samples and Methods Samples: eEF1A purified from yeast, 20ug/gel piece X5 20 ug digest with trypsin LC-MSMS: 0.4ug on column, 3hour run. IMAC for phospho-peptide enrichment for the rest of the samples. The phospho-peptides were analyzed by LC-MSMS. 50% on column, 80min run. Database search: GPM

21 STTTGHLIY p-me K meythyl 30

155 MDS p VKWDESR 164 B4-98 B3-98 B5-98 B8-98 NL-98 y3

289 S p VEMHHEQLEQGVPGDNVGFNVK 311 NL-98 y10 b13 2+ b12 2+ b11 2+ b10 2+ b19 2+ b20 2+ b22 2+ b13 y5 y3

312 VNS p VKEIR 319 NL-98 b6 b2 y2 y6 b7 b6-98 y4 b3-98

391 FLKS p GDAALVL 401 B2 NL-98 B3 B6 B8/y9-98 B9 B10 y3 y4 y7 y8 y9 y9 2+ y8-98 B9-98 B6-98 B5-98

402 FVPSK me PMCVEAFSEYPPLGR 421 y2 y18 3+ y18 2+ y5 y4 b15 2+ b b8 b10 2+ b15 S414p/Y416p b2