MiRNA ‐ dependent gene silencing involving Ago2 ‐ mediated cleavage of a circular antisense RNA by Thomas B Hansen, Erik D Wiklund, Jesper B Bramsen, Sune.

Slides:



Advertisements
Similar presentations
Non-Coding RNA Helen Nordquist November 13, 2015.
Advertisements

Formation of a nucleoprotein complex containing Tn7 and its target DNA regulates transposition initiation by Zachary Skelding, Robert Sarnovsky, and Nancy.
Modulation of NF ‐ κB ‐ dependent transcription and cell survival by the SIRT1 deacetylase by Fan Yeung, Jamie E Hoberg, Catherine S Ramsey, Michael D.
Disruption of the trypanothione reductase gene of Leishmania decreases its ability to survive oxidative stress in macrophages by Carole Dumas, Marc Ouellette,
SIP, a novel ankyrin repeat containing protein, sequesters steroid receptor coactivators in the cytoplasm by Ying Zhang, Hua Zhang, Jing Liang, Wenhua.
A viral protein inhibits the long range signaling activity of the gene silencing signal by Hui Shan Guo, and Shou Wei Ding EMBO J. Volume 21(3):
Date of download: 7/10/2016 Copyright © 2016 McGraw-Hill Education. All rights reserved. Basic steps of gene expression—transcription factors regulate.
Altered nucleotide misinsertion fidelity associated with polι ‐ dependent replication at the end of a DNA template by Ekaterina G. Frank, Agnès Tissier,
Visualization of RNA–protein interactions in living cells: FMRP and IMP1 interact on mRNAs by Oliver Rackham, and Chris M Brown EMBO J. Volume 23(16):
This paper is about RNA can inhibit gene expression
M. Louise Hull, Victoria Nisenblat  Reproductive BioMedicine Online 
The plant Mediator and its role in noncoding RNA production
Long Noncoding RNA in Prostate, Bladder, and Kidney Cancer
LncRNAs exert their effects by diverse mechanisms. LncRNAs exert their effects by diverse mechanisms. (A) lncRNAs can.
Transcription and Gene Regulation
M. Louise Hull, Victoria Nisenblat  Reproductive BioMedicine Online 
Biogenesis and functions of circular RNAs
The 5′‐terminal structure of the miRNA gene cluster miR‐23a∼27a∼24‐2.
Volume 28, Issue 3, Pages (November 2007)
From Gene to Protein.
Molecular Therapy - Nucleic Acids
Recent Developments in Retroviral-Mediated Gene Transduction
Flowering on Time: Multilayered Restrictions on FT in Plants
Nat. Rev. Gastroenterol. Hepatol. doi: /nrgastro
Integrating mRNA Processing with Transcription
Effect of altered 3′UTR on miRNA-mediated gene regulation.
Spliceosome-Mediated RNA Trans-splicing
Classification of Introns: U2-Type or U12-Type
Volume 13, Issue 10, Pages (May 2003)
Edwards Allen, Zhixin Xie, Adam M. Gustafson, James C. Carrington  Cell 
Stop that Noise and Turn Up the Antisense Transcription
TSA dose-dependent increase in transcription.
Lack of GTSF1 results in a target RNA (pit‐RNA) unsliced at the cleavage site for MILI‐directed secondary piRNA processing Lack of GTSF1 results in a target.
Mapping of small RNAs to LINE‐1 sequence (related to Figs 3 and 4)‏
DNA Methylation Mediated by a MicroRNA Pathway
Chapter 25 Analysis of Gene Expression
Chapter 6 Transcription of Genes
Protected by a Fox Neuron Volume 98, Issue 1, Pages 3-5 (April 2018)
Schematic model of effector pathways that mediate tumor suppression by p53. Schematic model of effector pathways that mediate tumor suppression by p53.
Volume 116, Issue 2, Pages (January 2004)
Phytochromes: Where to Start?
Dealing with Pervasive Transcription
Gyongyi Szabo, Peter Sarnow, Shashi Bala  Journal of Hepatology 
Baekgyu Kim, Kyowon Jeong, V. Narry Kim  Molecular Cell 
MicroRNA Processing: Battle of the Bulge
Volume 5, Issue 3, Pages (November 2013)
Jiaxin Hu, Jing Liu, David R. Corey  Chemistry & Biology 
Optimization of technical aspects for the genomic tagging approach.
Volume 66, Issue 3, Pages e4 (May 2017)
Loss of miRNA from Ago2 deactivates miRNPs in LPS‐treated mammalian macrophages. Loss of miRNA from Ago2 deactivates miRNPs in LPS‐treated mammalian macrophages.
Summary of RNA FISH quantifications.
TSA induces transcription from CCND1-MS2 alleles under CCND1 promoter control. TSA induces transcription from CCND1-MS2 alleles under CCND1 promoter control.
Enhancer RNA Facilitates NELF Release from Immediate Early Genes
Michael J Dye, Nick J Proudfoot  Molecular Cell 
Fig. 3. Coilin levels correlate with altered nascent U2 snRNA, hTR and rRNA levels.RNA isolated from HeLa or WI-38 cells following RNAi targeting coilin.
Barc knockdown causes intron retention of short, GC-rich introns with weak splice sites. barc knockdown causes intron retention of short, GC-rich introns.
Multiple antagonistic pathways regulate FLC expression levels before cold exposure. Multiple antagonistic pathways regulate FLC expression levels before.
Transcriptional autoregulation in development
Enhanced Tailored MicroRNA Sponge Activity of RNA Pol II-Transcribed TuD Hairpins Relative to Ectopically Expressed ciRS7-Derived circRNAs  Anne Kruse.
CREB1 promotes the induction of endogenous ERα target genes.
Enrichment of miRNAs among DPAR genes and their relative expression under dietary restriction. Enrichment of miRNAs among DPAR genes and their relative.
The Human DiGeorge Syndrome Critical Region Gene 8 and Its D
Not miR-ly small RNAs: Big potential for microRNAs in therapy
Exon Tethering in Transcription by RNA Polymerase II
Small RNAs and Immunity
Structure of proviral PERV
Nonsense-Associated Altered Splicing
HBoV1 transcription map.
Recent Developments in Retroviral-Mediated Gene Transduction
Volume 4, Issue 1, Pages (January 2011)
Presentation transcript:

miRNA ‐ dependent gene silencing involving Ago2 ‐ mediated cleavage of a circular antisense RNA by Thomas B Hansen, Erik D Wiklund, Jesper B Bramsen, Sune B Villadsen, Aaron L Statham, Susan J Clark, and Jørgen Kjems EMBO J. Volume 30(21): November 2, 2011 ©2011 by European Molecular Biology Organization

miR ‐ 671 represses CDR1 expression. Thomas B Hansen et al. EMBO J. 2011;30: ©2011 by European Molecular Biology Organization

Characterization of the circular CDR1 antisense RNA. (A) Schematic illustration of the circular antisense RNA including the NAS splice donor (SD) and splice acceptor (SA) sites and the position of the NAS ‐ specific primer set. Thomas B Hansen et al. EMBO J. 2011;30: ©2011 by European Molecular Biology Organization

Strand ‐ specific quantification of CDR1 mRNA and the antisense RNA. (A) Schematic illustration of the CDR1 locus with primers used for strand ‐ specific qRT–PCR of CDR1 mRNA (above) and antisense RNA (below), respectively. Thomas B Hansen et al. EMBO J. 2011;30: ©2011 by European Molecular Biology Organization

Effect of CDR1 antisense ‐ specific knockdown and overexpression. Thomas B Hansen et al. EMBO J. 2011;30: ©2011 by European Molecular Biology Organization

Ago2 ‐ mediated cleavage of the CDR1 antisense transcript. Thomas B Hansen et al. EMBO J. 2011;30: ©2011 by European Molecular Biology Organization