Botany 2012 Columbus, OH Deborah Paul, iDigInfo 0.

Slides:



Advertisements
Similar presentations
How to publish genomic Data papers based on BOL data - Biodiversity Data Journal Lyubomir Penev Bulgarian Academy of Sciences & Pensoft Publishers ViBRANT.
Advertisements

What is NESCent? Inspired by the National Center for Ecological Analysis and Synthesis What is NESCent?
SCAMIT-Morphbank Workshop Custom Workbook Submission Monday 8 August 2011 SCCWRP, Costa Mesa, CA.
Morphbank Image Repository Plus… Paleocollections Workshop April 26 – 28, 2012 Deborah L. Paul Support from NSF grants: Biological Databases.
1 Sharing Data decisions - opportunities - options support from NSF grant: Advancing Digitization of Biological Collections Program (#EF ) Deborah.
Data Cleaning, Validation and Enhancement iDigBio Wet Collections Digitization Workshop March 4 – 6, 2013 KU Biodiversity Institute, University of Kansas.
IDigBio Minimum Information Standards for Scientific Collections (MISC)/Authority Files Working Group Gil Nelson Andréa Matsunaga (on behalf of the WG)
Template and information based on data provided by DERI 1 Mondeca ITM presentation & possible (?) collaboration Semantic Web Portal Project Michael Stollberg.
Enabling the Distributed Family Tree Thesis Proposal November 10, 2006.
Database PowerPoint Guy Wade Comm 165 Guy Wade Comm 165.
Breakout Session 5 Languages (operators and rules) for specifying constraints, mappings, and policies governing financial instruments.
GO Enrichment analysis COST Functional Modeling Workshop April, Helsinki.
Cybertaxonomy and revisionary systematics Dmitry Dmitriev Illinois Natural History Survey, USA
Roles and Goals Greg Riccardi. iDigBio People University of Florida o Larry Page, Jose Fortes, Pamela Soltis, Bruce McFadden, Renato Figueiredo, Reed.
Welcome to the Nebraska SharePoint User Group May 7 th, 2008 Enterprise Content Management (ECM) in SharePoint Corey Erkes.
Currently 7 Thematic Collection Networks with 130 participating institutions A dvancing D igitization of B iodiversity C ollections (ADBC NSF Program)
Dan Masiga Molecular Biology and Biotechnology Department International Centre of Insect Physiology and Ecology, Nairobi, Kenya BARCODE Data Standard The.
SERNEC Image/Metadata Database Goals and Components Steve Baskauf
Advanced Computing and Information Systems laboratory iDigBio Cloud and Appliances: Concept, Processes and Progress Jose Fortes (on behalf of the iDigBio.
Key integrating concepts Groups Formal Community Groups Ad-hoc special purpose/ interest groups Fine-grained access control and membership Linked All content.
Cleaning Validating and Enhancing Data with Open Refine iDigBio – University of Florida 2 nd Train-the-Trainers Georeferencing Workshop Deborah Paul, iDigInfo.
IDs in and out of the database Entomological Collections Network (ECN) 2012 November 10 – 11, Knoxville, TN Debbie Paul, Greg Riccardi.
IDigBio is funded by a grant from the National Science Foundation’s Advancing Digitization of Biodiversity Collections Program (Cooperative Agreement EF ).
LNS Website, WebGIS and Spatial Data Mapping Information David R. Green – University of Aberdeen Guillaume De La Fons – University of Aberdeen Shirisha.
Morphbank Current Topics: Using Images & Metadata Biodiversity Informatics Course, 18 September 2009 Swedish Museum of Natural History (NRM), Stockholm.
At the frontline of publishing in systematic zoology: A presentation of ZooKeys Lyubomir Penev 1, Terry Erwin 2, Jeremy Miller 3 1 Pensoft Publishers,
Ontologizing morphological terms for Hymenoptera (Insecta) - implementing and benefiting from a controlled vocabulary Andrew R. Deans Gregory A. Riccardi.
Connecting Specimens, Images and Vocabulary Specify, Morphbank, Morphster Beach, Noble, Spears – KU Mast, Riccardi – FSU Miranker, Tirmizi UT.
1 The KlutchCrew AHC2.0 INTEGRITY CONSULTING Chris Coraggio Asmi Joshi Estefi Medina Amanda Schreier.
Click & Fix 11/04/10 James Cui Janam Jhaveri Paul Mongold.
Community Curation Enabling the research community to contribute annotations directly to WormBase Mary Ann Tuli.
1 Schema Registries Steven Hughes, Lou Reich, Dan Crichton NASA 21 October 2015.
VIKEF – Take the VIKEF train towards smart services …
Scratchpads The virtual research environment for biodiversity data Simon Rycroft, Dave Roberts, Vince Smith, Alice Heaton, Katherine Bouton, Laurence Livermore,
GDR in Drupal facilitating community building and efficient maintenance.
The project’s landing page is an overview of what the project is doing and how. Key information is displayed: such as the location, the development.
Overview PlantCollections – Publish information about public garden collections – Using existing infrastructure Morphbank – Goals and capabilities of.
Tzunami Deployer - Architecture Targets Deployers Exporters Sources.
IDigBio is funded by a grant from the National Science Foundation’s Advancing Digitization of Biodiversity Collections Program (Cooperative Agreement EF ).
IDigBio is funded by a grant from the National Science Foundation’s Advancing Digitization of Biodiversity Collections Program (Cooperative Agreement EF ).
Tools and tasks OBO-Edit. Edition of ontology CVS. OBO Foundry repository in SourceForge IMatch, MS-Access, scripted with Visual Basic for semi-automated.
SELTMANN 2, Katja; PRIETO-MARQUEZ 1,*, Albert; RONQUIST 2, Fredrik; RICCARDI 3, Gregory A.; DEANS 5, Andy; JAMMIGUMPULA 2, Neelima; MAST 1, Austin; WINNER.
SCAMIT and Morphbank Nov City of San Diego Environmental Monitoring Lab Nov City of San Diego Environmental Monitoring Lab Nov
MorphBank’s Approach to Determination Annotations Austin Mast | David Gaitros | Fredrik Ronquist | Peter Jörgensen | Corinne Jörgensen | Greg Riccardi.
Riccardi: DIALOGUE Workshop August 1, 2005 Supported by NSF BDI 1 Representing and Using Phylogenetic Characters in Morphbank Greg Riccardi, David Gaitros,
A Dissertation defense presented to the Department of Computer Science
Genetic Literature Curation at FlyBase-Cambridge Steven Marygold ABC meeting, December 2007 A Database of.
Directions For Accessing Your “Moodle” Team Account 1 Step 1: Use your team Moodle account to access Technology Challenge Louisiana High School Technology.
Progress on TripalBIMS Breeding Information Management System in Tripal Sook Jung, Taein Lee, Chun-Huai Chen, Jing Yu, Ksenija Gasic, Todd Campbell, Kate.
Progress Report Jon Garde, José Borbinha DLM Forum Members’ Meeting Luxembourg October 2015.
IT 210 Week 7 DQ 2 To purchase this material link 210-Week-7-DQ-2 For more courses visit our website
Creating a Database Microsoft Access.
NOTICE! These materials are prepared only for the students enrolled in the course Distributed Software Development (DSD) at the Department of Computer.
Steps for Downloading and Using the Fotosoft Image Uploader
G063 - Data flow diagrams.
Advanced CmapTools with v4 Institute for Human and Machine Cognition
OntoMorphBankSter: Image-driven Ontology and/or Ontology-driven Image Annotation Greg Riccardi, Austin Mast Florida State U Dan Miranker, Ferner Cilloniz,
PI: Michael Richardson
Data Management: The Data Repatriation Re-integration Step or …
Semantic Mediation System
Greg Riccardi PCORI CTSA School of Information
EFETAC and NEMAC Collaboration
File Upload.
Tufts University Sciences Knowledgebase (TUSK)
Capturing and Organizing Scientific Annotations
Paul S Waters Getting Git.
iDigBio API Hackathon ‘15 Introductory Webinar
BIT 143:Programming & Data Structures in C#
Cal-PASS User’s Training San Diego/Imperial Data Sharing Consortium
1 Directions For Accessing Your “Moodle” Team Account
Presentation transcript:

Botany 2012 Columbus, OH Deborah Paul, iDigInfo 0

topics oMoMorphbank overview ololinking data & images ofofrom Morphbank ototo Morphbank oaoannotations oioin progress 1

2

3

topics oMoMorphbank overview ololinking data & images ofofrom Morphbank ototo Morphbank oaoannotations oioin progress 4

linking o aggregators o ontologies o publications o maps o databases o provider websites GenBank ® Cladistics ® FilteredPUSH 5

linking to ontologies o Cypriniform Tree of Life (CToL) o 6

linking to ontologies o Cypriniform Tree of Life (CToL) o 7

linking to genbank 8

9

linking to publications 10

linking to publications 11

linking from Morphbank to provider website Lonicera fragrantissima 12

topics oMoMorphbank overview ololinking data & images ofofrom Morphbank ototo Morphbank oaoannotations oioin progress 13

linking from a paper

15

16

linking from a key E. Grissell, M. E. Schauff & Mike Gates 17

topics omomorphbank overview ololinking data & images ofofrom morphbank ototo morphbank oaoannotations oioin progress 18

annotations 19

annotations 20

annotations 21

topics omomorphbank overview ololinking data & images ofofrom morphbank ototo morphbank oaoannotations oioin progress 22

new & in development o o validation service validation service o two new Upload methods o from Specify (prototype) o working on upload from a DwC-A file o new Morphbank shared folder service o in development o FilteredPUSH testing o in progress o Morphbank V4 (Drupal) 23

integration with o iDigBio – primary repository for data discovery o import to a local instance of Morphbank o updates and annotations shared o iDigBio updates / annotations to Morphbank o Morphbank updates / annotations to iDigBio o push local records to iDigBio 24

acknowledgements Morphbank Contributors & Collaborators o CBG, AToL, PEET, PBI, MX, HERBIS, CToL, PlantCollections Project, SERNEC, FSU, PlatyPBI, SAIN, UAM, EoL, Specify, USMS, TTRS, Bioimages, Auburn, Troy, Ohio State, USM, LA NHM, Smithsonian, TTRS, USD, … 25

Thanks from the Morphbank Team ~ 2012 o Greg Riccardi o Austin Mast o Fredrik Ronquist o Debbie Paul o Robert Bruhn o Guillaume Jimenez o Casey McLaughlin o Steven Winner o Katja Seltmann o Albert Prieto-Marquez o Corinne Jorgensen o Michael Jennings o Neelima Jammigumpula o Karolina Jakimoska o David Gaitros o Cynthia Gaitros o Greg Erickson o Andrew Deans o Christopher Cprek o Wilfredo Blanco 26

Feedback: Privacy Policy Feedback
Do Not Sell My Personal Information
About project: SlidePlayer Terms of Service

© 2025 SlidePlayer.com. Inc. All rights reserved.