Using the bioBakery Curtis Huttenhower

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Presentation transcript:

Using the bioBakery Curtis Huttenhower (chuttenh@hsph.harvard.edu) Galeb Abu-Ali (gabuali@hsph.harvard.edu) Ali Rahnavard (rah@broadinstitute.org) STAMPS 2017 08-08-17 Harvard T.H. Chan School of Public Health Department of Biostatistics

http://huttenhower.sph.harvard.edu/biobakery

The bioBakery: a next-generation environment for microbiome analyses Environment for meta’ome analysis Shotgun metagenomes/transcriptomes Taxonomic and functional profiling Experimental design, statistical analysis Pre-built one-click environments to run: On your laptop graphically On a server remotely On the cloud (Amazon / Google) http://huttenhower.sph.harvard.edu/biobakery

Launching the bioBakery on Google Cloud http://huttenhower.sph.harvard.edu/biobakery Lauren McIver Workshop Usage Web Browser

Launching the bioBakery on Google Cloud http://tinyurl.com/hut-stamps-guac Lauren McIver Connect to the VPN first! In the instance list, find your number. Connect to that instance. Make sure you can launch a terminal and run a command. (I recommend echo hello world) Make sure you can upload and download a file. student biobakery

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