BIO1140 Lab 3: Cellular processes in Amoeba proteus

Objectives of the lab Identify, photograph and measure organelles found within Amoeba proteus. Observe cell processes such as: amoeboid movement, contractile vacuole cycle and endocytosis. Measure the diameter of the contractile vacuole at selected intervals throughout its cycle. Use these measurements to plot a graph showing the variation of the vacuole volume during time.

Method (setup) Carefully connect compound microscope camera to your computer . Clean optical surfaces of microscope (oculars, objectives, top of condenser and top of lamp housing) using kimwipes.

Microscopic observations Amoebas are sensitive to light and heat: Keep the light intensity low during observations.

Part I: Amoeba anatomy Identify and know the function of structures and organelles listed in the file: ‘Amoeba structures’ (Lab web site). Locate an amoeba on your slide using the 4x objective. Then, switch to the 10x and 40x objectives. There will be questions about Amoeba anatomy and movement in the final exam.

plasmalemma granular endoplasm hyalin cap pseudopodium food vacuole uroid ectoplasm contractile vacuole nucleus dinner

Part II: Amoeboid movement Your task: Under the 10X observe the formation and elongation of pseudopodia Switch to the 40x objective to observe the movement of granular endoplasm. See animations on Digizoo Site as well as HERE and HERE. Take several pictures during amoeboid movement Advice: Take notes, draw sketches and label all structures you observed. Represent the stream of fluid endoplasm using arrows. There will be few extra slides containing Amoebas if needed + one flask per lab with more amoeba for the pinocytosis or replacement. They don’t have to hand in the sketches.

Part II: Amoeboid movement TIPS: Locate an amoeba on the slide using the 4X objective Adjust the aperture diaphragm (closed = darker with more contrast / open = brighter with less contrast).

Part III: Contractile vacuole cycle Your task: measure the contractile vacuole (CV) diameter throughout its cycle. Contractile vacuole: Function: osmoregulation and waste removal Location in the cell: variable Duration: about 5 minutes at 20°C (cycle duration increases with temperature). Cycle components: Diastole (coalescence and continual growth) Systole (release of CV contents to exterior).

Part III: Contractile vacuole cycle

Diastole Part III: Contractile vacuole cycle Systole t=5-8 minutes (300-480s*) t=30 s No vacuole visible yet (diameter=0) Diastole t=60-120 s Small vacuoles start to aggregate and fuse *stop measurements after 480s

Contractile Vacuole: Methods Locate the contractile vacuole (CV) using the 10x objective. THEN: Once you’ve found a CV switch to 40x objective Observe at least one full cycle before starting the measurements. Time is 0 when systole occurs (=vacuole disappears).

Contractile Vacuole: Methods Take picture of CV every 30 seconds during 2 full cycles (for up to 480 seconds each). Save your pictures in your section’s folder Warning: SAVE YOUR PICTURES PROGRESSIVELY or you will lose them. Once done, measure the diameter of the contractile vacuole (in µm) on each pictures. while measuring, do NOT trace lines on computer screen (-10% immediately) Pictures must be taken at the 40x objective in order to get a precise measurement of the diameter Students measure 2 cycles to increase the sample size – they plot only ONE CYCLE on the graph

Contractile Vacuole: Methods Enter your data on the lab3 page of the lab webpage (biolab1.uottawa.ca): Enter diameter for each time point. Diameter starts at 0 by definition Your cycle may be shorter than 480s: in this case leave the other time points blank (do not enter zero). Diameters will be converted into volumes (µm3), and class average and standard error will be calculated automatically on the website. Data will be available on the Lab3 page of biolab1 tomorrow.

Part IV: Endocytosis Unmount the Amoeba slide - DO NOT THROW AWAY THE SLIDE -(tech. skills!) Dispose of coverslips in one of the 2 beakers located a the back of the lab Go to the endocytosis station Ask your TA for an amoeba Add coverslip Observe shape changes and formation of endocytic canals under microscope

Time Budget Lab3 Quiz – 10 minutes TA Prelab Talk - 15 min. Amoeboid Observation – locomotion & anatomy – 45 minutes Amoeba contractile vacuole cycle - 75 min. Endocytosis – 10 min. Questions to TAs and cleaning of bench 10 min For TA info only

Lab 3 Report: Title page + Graph Contractile vacuole Graph Plot CV volume (average +/- standard error) over time (0 to 480 seconds = one cycle) using the class data. Graph (dot plot) must be done BY HAND (no computer generated graph) on millimeter paper. Include a caption located below the graph (see lab manual appendix) Read instruction file on the Lab3 page of lab web Due date: Week 1 sections: 2 weeks after lab Week 1 sections: 1 week after lab Data will be available on lab website tomorrow.

Reminders Clean up or lose technical skill marks Rinse Amoeba slide and put it back on the tray where you took it. Dispose of cover slips in the broken glass beaker. Delete all files your saved clean up work bench clean optical surfaces of your microscope proper microscope return verified by TA before you leave NEXT LAB: MITOSIS with prelab quiz about lab4

Available documents Read lab3 documents on the lab website: List of Amoeba structures Anatomy scheme Instruction file for report