Theme 1: Biological uptake and trace element bioavailability

Slides:



Advertisements
Similar presentations
Individual-based Models Three Examples
Advertisements

Factors that influence primary producers –biomass, productivity, diversity Light Temperature Flow of water Consumers Scouring action of floods Toxic substances.
These may be natural and/or cultural. They have particular characteristics and features which can be the result of natural and/or cultural processes. Their.
Lecture 3 Trace Elements in Seawater What are trace elements? Why are they important? Principal of Oceanographic Consistency. Profiles shapes as clues.
Biology 364 – Animal Physiology
Using Gene Ontology Models and Tests Mark Reimers, NCI.
Marine Chemistry and Biological Oceanography 海洋化學與生物海洋.
Quantifying the organic carbon pump Jorn Bruggeman Theoretical Biology Vrije Universiteit, Amsterdam PhD March 2004 – 2009.
Lecture 3 Trace Metals in Seawater What are trace elements? Why are they important? Principal of Oceanographic Consistency. Profiles shapes as clues for.
Cycling of Ocean Micronutrients: What do we Know and What do we Need to Know? Ed Boyle Earth, Atmospheric and Planetary Sciences Massachusetts Institute.
Temporal scale Spatial scale Local National/ Regional Global Days YearsDecades Local action Investment priorities Global targets Science-based conservation:
A NOTEBOOK PROGRAMME IN SCHOOLS Differentiation and the teacher librarian.
OUR Ecological Footprint …. Ch 20 Community Ecology: Species Abundance + Diversity.
Lesson 4: The Biogeochemical Cycle Chemical Oceanography.
Title: Spatial Data Mining in Geo-Business. Overview  Twisting the Perspective of Map Surfaces — describes the character of spatial distributions through.
Open Oceans: Pelagic Ecosystems II
The Chemistry of Seawater An Introduction to the World’s Oceans Sverdrup et al. - Chapter Six - 8th Ed.
Lecture 19 HNLC and Fe fertilization experiments
SLA Seminar, NSYSU 11/17/2006 Ch. 9 Cognitive accounts of SLA OUTLINE Cognitive theory of language acquisition Models of cognitive accounts Implicit vs.
Interdisciplinary Integration and Research Directions CMOP possesses a wide range of interdisciplinary research assets - Biological - Chemical - Physical.
Improving food quality & safety -omics & agricultural management: driving forces? 1. What will an ideal plant be able to do? 2. How far away are we from.
Modeling and Forecasting Climate Change, Biophysical Impacts, and Ecological and Economic Adaptations Forestry and Agriculture Greenhouse Gas Modeling.
Spring 2012 Writing 20:Ocean Acidification January 19, 2012 Lecture 2 “Physiological and Ecosystem Effects of Ocean Acidification: Potential Direct and.
Iron and Biogeochemical Cycles
The distribution of dissolved zinc in the South Atlantic as part of the UK GEOTRACES Programme UK GEOTRACES N. Wyatt 1, A. Milne 1, M. Woodward 2 G. Henderson.
Fall 2011 Writing 20:Ocean Acidification September 5, 2011 Lecture 2 “Physiological and Ecosystem Effects of Ocean Acidification: Potential Direct and.
2006 OCRT Meeting, Providence Assessment of River Margin Air-Sea CO 2 Fluxes Steven E. Lohrenz, Wei-Jun Cai, Xiaogang Chen, Merritt Tuel, and Feizhou Chen.
GEOTRACES: The Importance of Temporal Variability Peter Sedwick Bermuda Institute of Ocean Sciences meridional variation on dissolved Fe in upper 100 m.
Connectivity over ecological and evolutionary time in coral reef fishes Serge PLANES Connectivity over ecological and evolutionary time Serge Planes
Application of Class Discovery and Class Prediction Methods to Microarray Data Kellie J. Archer, Ph.D. Assistant Professor Department of Biostatistics.
Lecture 05 Biogeochemical Aspects of Aluminum, Lead, Copper, Cadmium, and Zinc.
WP 11 - Biogeochemical Impacts - Kick-off meeting Nice 10 – 13/06/2008.
Natural Selection in a Model Ocean
OEAS 604: Final Exam Tuesday, 8 December 8:30 – 11:30 pm Room 3200, Research Innovation Building I Exam is cumulative Questions similar to quizzes with.
What is a QTL? Quantitative trait locus (loci) Region of chromosome that contributes to variation in a quantitative trait Generally used to study “complex.
Network applications Sushmita Roy BMI/CS 576 Dec 9 th, 2014.
Different microarray applications Rita Holdhus Introduction to microarrays September 2010 microarray.no Aim of lecture: To get some basic knowledge about.
Trace metal distributions in the N Atlantic: What do we know, what should we be looking for? Chris Measures University of Hawaii.
OUR Ecological Footprint …. Fall 2008 IB Workshop Series sponsored by IB academic advisors Study Abroad for IB Majors Thursday, October 30 4:00-5:00PM.
Lecture Chemical Speciation in the Oceans (and beyond) 1.
Proposed German RV Meteor cruise to the Central Atlantic Ocean Barbados – Las Palmas currently scheduled for April 9 – May 9, 2009.
A presentation by: Christine Adams, Louise Tunnah, Jen Dwyer, Steven Sutcliffe, Jenn O’Blenes, and Jill Briand.
Announcements Seminar today after class! Seminar Wednesday!
Meghan Hartwick, Cheryl Whistler, Erin Urquhart
David Talmy, Adam Martiny, Anna Hickman, Mick Follows
GIS Mapping.
Theme 1: Biological uptake and trace element bioavailability
GEOTRACES Atlantic Workshop
Figure S2 A B Log2 Fold Change (+/- cAMP) Transcriptome (9hr)
Time-Course Network Enrichment
UK GEOTRACES 40° S Atlantic Ocean Water column Biogeochemistry
Theme 2: Abiotic Cycling and Scavenging
Questions from Yesterday: Stoichiometry Working Group
Building and Analyzing Genome-Wide Gene Disruption Networks
Lotic Communities What is a community? A) The Dictionary B) The Ideal
Fall 2007 – Mak Saito Chief Scientist
Iron and Biogeochemical Cycles
A Phase Separation Model for Transcriptional Control
UK GEOTRACES Atlantic Ocean Water column Biogeochemistry
Volume 20, Issue 5, Pages (November 2014)
Happy Golden Anniversary SCOR!
Controls: climate.
Ecology Ch. 3 – The Biosphere.
COMMUNITY ANALYSIS.
Lesson 4: The Biogeochemical Cycle Chemical Oceanography
Volume 20, Issue 5, Pages (November 2014)
Volume 42, Issue 6, Pages (June 2011)
L06 Part I Previously: Metal speciation theory and biological cellular uptake theory Today: Connecting speciation and cellular uptake in the marine.
Iron as a limiting nutrient in HNLC regions
Roles of Defense Hormones in the Regulation of Ozone-Induced Changes in Gene Expression and Cell Death  Enjun Xu, Lauri Vaahtera, Mikael Brosché  Molecular.
Presentation transcript:

Theme 1: Biological uptake and trace element bioavailability

i) Largest scales: oceanic inventories 1. How does stoichiometric plasticity connect to trace metal distribution and inventories? Mark Moore presentation ‘Conservative’ i) Largest scales: oceanic inventories Residence time (kyr) ‘Nutrient like’ Trace metals have differential availability (relative to biological demands) within the modern ocean ~circ ‘Scavenged/hybrid’ Figure adapted from Moore et al. (2013) Nature Geo. ‘…you conveniently ignore all that stoichiometric variability…’ (Gideon Henderson, GEOTRACES mtg., London, Dec 2015) Recognise it and embrace it… (e.g. Sarmiento et al. 2004 Nature; Weber and Deutsch 2012 Nature; DeVries and Deutsch 2014 Nature Geo.; Galbraith and Martiny 2015 PNAS)

Uptake of Fe‘ and siderophore bound Fe (FeDFB) 2. How much do we know about the different TE acquisition systems of microorganisms? 3. What ‘modes’ of metal (M) uptake dominate in different natural systems? Fe‘ (inorganic) Uptake of Fe‘ and siderophore bound Fe (FeDFB) Surface area normalized uptake (Kin/S.A) is similar among all Euks for Fe’ and for FeDFB. But Fe’ >> FeDFB (x1000) FeDFB (Fe-siderophore) Uptake rate / [Fe Sub] Yeala Shaked presentation

4. How important are co-limitations? N and Fe stress markers in Prochlorococcus: Successfully track biome shifts (N lim, Fe lim) Highlight areas of possible co-limitation 4. How important are co-limitations? Saito et al. data, Chappell presentation

5. Can we consider the influence of multiple metals on organisms? high Fe requirement & potential functional complementary of these metals Ho presentation

6. How can molecular and biochemical info improve our knowledge? Fe Stress Gene Expression from Community Incubations (Chappell, Fitzsimmons, Ohnemus unpublished) Chappell presentation Expression indicative of Fe stress is evident in most treatments. Samples for expression analysis taken at 72hrs

Theme 1: Biological uptake and trace element bioavailability 1. How does stoichiometric plasticity connect to trace metal distribution and inventories? 2. How much do we know about the different TE acquisition systems of microorganisms? 3. What ‘modes’ of metal (M) uptake dominate in different natural systems? 4. How important are co-limitations? 5. What are the interactions within an organism for multiple metals? 6. How can biochemical and molecular information to improve our knowledge? 7. How do we improve our understanding of TE bioavailability? 8. What is the role of TE speciation (redox, organic, and physical) for their uptake and bioavailability (link with Theme 2)? 9. Can we connect entire food-web structure with TE uptake and inventories? 10. Can we capture and understand temporal variations (early stage vs. decline of the bloom) and spatial variations? 11. How available are regenerated TEs (link with Theme 3)? 12. How can biological and biogeochemical processes be incorporated into models? 13. How do we connect large GEOTRACES datasets to their influence on the biological pump?

The bioavailability envelope: comparing Fe substrates FeDFB More bioavailable Fe substrates Less bioavailable Fe substrates by dividing the uptake constant by surface area. The Fe’ and FeDFB regressions set up the limits of the envelope. The more available substrates falling closer to the Fe’ line are… The least available Fe substrates falling closer to the FeDFB line are.. Yeala Shaked presentation log (kin/S.A)