M. Di Foggia1, A. Torreggiani2, P. Taddei1, M. Dettin3, S

Slides:



Advertisements
Similar presentations
Review: Amino Acid Side Chains Aliphatic- Ala, Val, Leu, Ile, Gly Polar- Ser, Thr, Cys, Met, [Tyr, Trp] Acidic (and conjugate amide)- Asp, Asn, Glu, Gln.
Advertisements

Protein Purification and Analysis Day 4. Amino Acids, Peptides, and Proteins.
1 Levels of Protein Structure Primary to Quaternary Structure.
Amino Acids and Proteins 1.What is an amino acid / protein 2.Where are they found 3.Properties of the amino acids 4.How are proteins synthesized 1.Transcription.
Using UV/Vis and IR light to Interrogate surfaces UV-Vis spectra can be obtained on quartz slides by transmission or reflectance Spectroscopic ellipsometry.
Catalytic Mechanism of Chymotrypsin slide 1 Chymotrypsin –Protease: catalyze hydrolysis of proteins in small intestine –Specificity: Peptide bond on carboxyl.
Protein Structure FDSC400. Protein Functions Biological?Food?
Lesson today Protein Teacher : Isroli Laboratory : Animal Physiology and Biochemistry Faculty : Animal Agriculture Diponegoro University.
Chapter Three Amino Acids and Peptides
Chapter 2 : Water Lets Jump into …. Water. Opening figure: fatty acid in a clathrate with waters of hydration (more dense than surrounding water) around.
Surface Modification for Biomaterials Applications
Metal Nanoparticle/Carbon Nanotube Catalysts Brian Morrow School of Chemical, Biological and Materials Engineering University of Oklahoma.
A Fundamental Study of Nanoparticle–Protein Mutual Interactions: Role of Nanoparticle Morphology and Size Funded by the NSF Grant number: # G. Pyrgiotakis.
Sang Min Park, Sang Jun Yoon, and Hong Sung Kim † Dept. of Biomaterial Engineering, Pusan National University, Miryang, Republic of Korea Preparation and.
Protein Folding & Biospectroscopy F14PFB David Robinson Mark Searle Jon McMaster
Amino Acids & Side Groups Polar Charged ◦ ACIDIC negatively charged amino acids  ASP & GLU R group with a 2nd COOH that ionizes* above pH 7.02nd COOH.
Figure 3. SEM images of electrospun microfiberous scaffolds : (A) random PCL scaffold and (B) highly aligned PCL scaffold. Analysis of orientation with.
Amino Acids are the building units of proteins
1 10/26/2015 MOLECULES. 2 10/26/2015 H 2 N-CH-C-OH O R Monomer E.g. protein Monomer vs polymer amino acid monomer R is a side group.
SULFRAD-Stockholm- Conductivity Time-resolved Conductivity in Pulse Radiolysis Time-resolved Conductivity in Pulse Radiolysis Klaus-Dieter Asmus.
Grupo de Espectroscopia Molecular, Unidad Asociada CSIC Laboratorios de Espectroscopia y Bioespectroscopia Edificio Quifima. Parque Científico Universidad.
SYNTHETIC EXTRACELLULAR MATRICES FOR PROMOTING ANGIOGENESIS Eduardo A. Silva Harvard University, Cambridge, MA, USA and Faculdade de Engenharia da Universidade.
Amino Acids  Amino Acids are the building units of proteins. Proteins are polymers of amino acids linked together by what is called “ Peptide bond” (see.
Amino Acids, Peptides, and Proteins. Introduction to Amino Acids  There are about 26 amino acids, many others are also known from a variety of sources.
Physicochemical transformations of ZnO NPs under aging process in aquatic environment and the toxicity to green algae Hefei Institutes of Physical Science,
Laboratory of Millimetre-wave Spectroscopy of Bologna LABORATORY MEASUREMENTS in SUPPORT of ASTRONOMICAL OBSERVATIONS: ROTATIONAL SPECTROSCOPY up to the.
Levels of Protein Structure. Why is the structure of proteins (and the other organic nutrients) important to learn?
Levels of Protein Structure. Why is the structure of proteins (and the other organic nutrients) important to learn?
Definition Surface Modification
Introduction Synthesis of glass Physico-chemical characterization of the prepared glass Synthesis and characterizations of functionalized glass Conclusions.
EXPERIMENT (5) Preparation and Properties of Buffer Solution
Amino acids Proof. Dr. Abdulhussien Aljebory College of pharmacy
CHM 708: MEDICINAL CHEMISTRY
Lecture 13 February 16, 2016 Biotech 3.
Amino Acid & Basic Classification
Bone substitute materials Surface modifications
a useful tool to probe protein structural changes
Chemistry 301 Q1 September 26, 2017: Agenda
Chapter 2: Chemistry 2-1 Composition of Matter 2-2 Energy
Protein Structure and Properties
Reactions of Aromatic Compounds
University of Leicester
Soft Matter Soft matter is held together by the two weakest types of bonding, the hydrogen bond and the van der Waals bond. It does not exhibit the crystalline.
DNA is a linear polymer composed of monomers consisting of deoxyribose sugar, a phosphate and one of four bases.
Amino Acids General Amino Acids:
Protein Structure FDSC400. Protein Functions Biological?Food?
Lecture 14 Dr. Souradyuti Ghosh
CSIR - Central Leather Research Institute Chennai ,Tamil Nadu, India
Valencia, September, 2016 Evaluation of solid-phase chromatography as a method for natural organic matter characterization Dr Aleksandra Tubić,
Light-Triggered Differentiation of Human Neural Stem Cells to Neurons
Carbon and the Molecular Diversity of Life
Study on the Self-assembly of Diphenylalanine-based Nanostructures by Coarse-grained Molecular Dynamics Cong Guo and Guanghong Wei Physics Department,
Observations of Peptide Behavior on the Nanoscale:
Packet #9 Supplement.
Packet #9 Supplement.
Amino acids R-groups non-polar polar acidic basic proteins
Chapter 19: Proteins.
The Conformational Landscape of Serinol
Amino acids R-groups non-polar polar acidic basic proteins
Levels of Protein Structure
Biomolecules. Biomolecules The Water Life exists on Earth because of the abundant liquid water. Water has been referred to as the universal solvent.
Volume 12, Issue 9, Pages (September 2005)
Solution Structure of the Cyclotide Palicourein
Chapters 20/21 carboxylic acids and derivatives
Proteins Proteins have many structures, resulting in a wide range of functions Proteins do most of the work in cells and act as enzymes 2. Proteins are.
Introduction During the last years the use of Fourier Transform Infrared spectroscopy (FTIR) to determine the structure of biological macromolecules.
“When you understand the amino acids,
Titanium Dioxide Sensitized with Porphyrin Dye as a Photocatalyst for the Degradation of Water Pollutants Kevin Reyes, A.S. & Ivana Jovanovic, Ph.D. Department.
Raman Spectroscopy A) Introduction IR Raman
Presentation transcript:

SERS characterization of self-assembling oligopeptides for tissue engineering M. Di Foggia1, A. Torreggiani2, P. Taddei1, M. Dettin3, S. Sanchez-Cortes4, A. Tinti1 1 Dip. Scienze Biomediche e Neuromotorie, Università di Bologna, Italy. 2 ISOF-CNR, Bologna, Italy. 3 Dip. di Processi Chimici dell’Ingegneria, Università di Padova, Italy. 4 Dep. de Espectroscopia Vibracional y Procesos Multifotonicos, Madrid, Spain.

1st Faculty of Chemistry Bologna docet 1929 1st University 1st Faculty of Chemistry 1st Raman Spectrometer 1st SERS?

BIOMEDICAL MATERIALS SURFACE PROPERTIES Growth and support of damaged tissues Secret of success… SURFACE PROPERTIES improving the morphology of the material itself (porosity, synthesis, roughness…) inserting something that cells love!

SELF-ASSEMBLING PEPTIDES Biomimetic coatings for orthopaedics and dentistry Biocompatible and biodegradable Form membranes and stable fibrillar aggregates Many biomedical and pharmaceutical applications: drug-release systems matrices supporting cellular growth (neurite growth and synapsis formation) LEGO® peptides

leukocytes excrete high levels of ·OH: O2·- + H2O2 → ·OH + OH- + O2 The peptides “hide” the prosthetic device to the immunitary system, but the surgical procedure triggers the beginning of an inflammatory process: leukocytes excrete high levels of ·OH: O2·- + H2O2 → ·OH + OH- + O2 g-radiation of aqueous solutions of peptides in protected atmosphere (NO2), produces ·OH at physiological concentrations: H2O + hν → ·OH + H· Can radical attack alter peptide structure, thus hampering biomimetic coating functionality? 5

PEPTIDES EAK-161 + - b-sheet structure (best interaction surface-peptide-cells): electrostatic interactions between charged side chains (COO-/NH3+) hydrophobic interactions between aliphatic side chains p-p interaction between aromatic side chains 1 Zhang S et al, PNAS, 1993

PEPTIDES

STRUCTURE SENSITIVE BANDS Amides bands depends on H-bonds strenght: highly sensitive structural bands. Amide II Amide III Amide I Raman

METHODS Structural changes caused by radical attack were evaluated by FT-Raman spectroscopy and SERS technique on Ag colloids (≈ physiological conditions). SERS can be used to establish the relative importance of specific functional groups in controlling peptide adsorption (very debated problem!). Hydroxylamine hydrochloride Cl-

Radiation treatment: peptides 1, 3, 5, 7, 8 non-irradiated peptide difference spectrum

Peptides 2, 4: Asp  Glu non-irradiated peptide difference spectrum Structural variations on backbone chain Structural variations on aliphatic side-chains b-sheet decrease a-elix/random increase non-irradiated peptide difference spectrum

Structural variation in Tyr Peptide 6: Tyr Structural variation in Tyr side chains non-irradiated peptide difference spectrum

CONCLUSIONS (part 1) Peptides 2 and 4 showed severe structural variations: Asp decarboxylation Peptides 1, 3, 5, 7 and 8 were resistant to radical attack (1, 5 and 7 were found to stimulate osteoblasts proliferation in cell culture studies) 13

SERS spectra: peptides 1, 2, 7 Ag-COO- interaction ns COO- Am. III nas COO- b-sheet n C-COO- _ SERS _ FT-Raman Am. IV r CO

SERS spectra: peptides 3, 4 Mainly Orn (NH3+…Cl-) interaction r CH2 def as NH3+ t NH3+ Am. IV n COO- def NH3+ n C-COO- r NH3+ _ SERS _ FT-Raman Ag Cl- Cl-

Both COO- and NH3+ interaction SERS spectra: peptide 5 Both COO- and NH3+ interaction n COO- def as NH3+ n C-COO- _ SERS _ FT-Raman b-sheet Am. III

Both COO- and amide bond interaction SERS spectra: peptide 8 Both COO- and amide bond interaction Am. I n COO- n C-COO- Am. III _ SERS _ FT-Raman Am. IV

Both Tyr- and COO- interaction SERS spectra: peptide 6 Both Tyr- and COO- interaction 1605 Tyr- n COO- Tyr- Tyr- _ SERS _ FT-Raman Tyr- 1616 n C-COO-

Small changes in the SERS spectra SERS spectra: peptide 1, g-irradiation Small changes in the SERS spectra SERS Difference spectrum ns COO- Am. IV r CO n C-COO-

Major changes in the SERS spectra SERS spectra: peptide 4, g-irradiation Major changes in the SERS spectra ns COO- SERS Am. I Am. III n C-COO- def NH3+ Am. IV Difference spectrum def as NH3+ r CH2 t NH3+

CONCLUSIONS (part 2) SERS spectra evidence different peptide – colloid interactions as a function of a.a. substitution. SERS spectra highlights major changes on the peptide – colloid interaction for g-degraded peptides (i.e. pept 2, 4 and 6). Bibliography: [2] A. Tinti, M. Di Foggia, P. Taddei, A. Torreggiani, M. Dettin, C. Fagnano, J. Raman Spetrosc. 39 (2008) 250. [3] M. Di Foggia, P. Taddei, C. Fagnano, A. Torreggiani, M. Dettin, S. Sanchez-Cortes, A. Tinti, J. Mol. Struct. 924 (2009), 120. [4] M. Di Foggia, P. Taddei, A. Torreggiani, M. Dettin, A. Tinti, J. Raman Spetrosc. 42 (2011) 276. [5] M. Di Foggia, P. Taddei, A. Torreggiani, M. Dettin, A. Tinti, J. Raman Spetrosc. (2013) DOI 10.1002/jrs.4271., 21

Thank you for your kind attention! Ab-initio calculations: attributions interaction type Thank you for your kind attention! 22