Identification of gene networks associated with lipid response to infection with Trypanosoma congolense Brass A3; Broadhead, A2; Gibson, JP1; Iraqi, FA1,

Slides:



Advertisements
Similar presentations
Using mouse genetics to understand human disease Mark Daly Whitehead/Pfizer Computational Biology Fellow.
Advertisements

Biochemical composition of blood in norm and pathology: acute phase proteins, enzymes of blood plasma.
Pathways regulating response to Trypanosoma congolense infection Harry Noyes University of Liverpool.
Genome responses of trypanosome infected cattle The encounter between cattle and trypanosomes elicits changes in the activities of both genomes - that.
A Transgenic Approach to QTL analysis in a Trypanotolerant Mouse Model Anderson SI 1 Noyes HA 2 Agaba M 3 Ogugo M 3 Kemp SJ 2,3 Archibald AL 1 1 Roslin.
Trinity College Dublin KARI-TRC Shirakawa Institute of Animal Genetics Genomic approaches to trypanosomiasis resistance - some surprises.
Congenic mice infected with Trypanosoma congolense Harry Noyes University of Liverpool.
Discovering the genes controlling response to Trypanosoma congolense infection Harry Noyes University of Liverpool.
BIG DIFFERENCES BETWEEN GENOTYPES AND OVER TIME. Between 600 and 750 probes were differently expressed between infected and uninfected cattle. Principle.
Early and sustained acute falls in total serum cholesterol are associated with critical illness mortality in the setting of tight glycaemic control Paul.
Genome wide expression consequences of a disease resistance QTL are strongly influenced by the genetic background.
Trinity College Dublin KARI-TRC Shirakawa Institute of Animal Genetics.
Trinity College Dublin KARI-TRC Shirakawa Institute of Animal Genetics Functional genomics to explore host response to trypanosome infection in particular.
Butte Lab Journal Club 10/11/10 Linda Liu. - Used 2 models of cell transformation - Mammary cells - Fibroblasts transformed with Ras - Identified 350.
INTRODUCTION Nutrigenomics Dr. Muhamad Firdaus
Doreen Asiimwe Buhwa 1, Philip Magambo 1, Julius Mulindwa 2, Stephen Ochaya 3, Bjorn Anderson 3, Anne Kazibwe 1, Enock Matovu 1 1 College of Veterinary.
Towards an understanding of Genotype-Phenotype correlations Paul Fisher et al.,
Ankita Desai HUMAN AFRICAN TRYPANOSOMIASIS (SLEEPING SICKNESS)
Protozoa Trypanosomes.
Hormones Peptide HormonesSteroid Hormones. Examples of Lipophillic Hormones.
Ping Wang, Mar Method Paper. Ping Wang, Mar Outline Methods –Multiple QTL model identification procedure –Adjacency Measurement –Clustering.
CD47 modulates the phagocytic clearance and replication of Plasmodium yoelii malaria parasite Rajdeep Banerjee 1, Sanjay Khandelwal 2, Yukiko Kozakai 1,
Accelerating positional cloning in mice using ancestral haplotype patterns Mark Daly Whitehead Institute for Biomedical Research.
Rennie C1 Hulme H2 Fisher P2 Hall L3 Agaba M4 Noyes HA1 Kemp SJ1,4
Identifying candidate genes for the regulation of the response to Trypanosoma congolense infection Introduction African cattle breeds differ significantly.
EQTLs.
Trinity College Dublin
Modulation of Gene Expression via Disruption Of NF-kB Signaling by a
US cost-effectiveness of simvastatin in 20,536 people at different levels of vascular disease risk: randomised placebo-controlled trial UK Medical Research.
Adiponectin Correlation With Plasma Lipoprotein Subclasses Determined By NMR And With The Risk Of Venous Thrombosis. Fernández JA, Deguchi H, Pecheniuk.
Noyes HA1 Agaba M2 Gibson J3 Ogugo M2 Iraqi F2 Brass A4 Anderson S5
Hassan, M. 1 & 2, Kemp, S. J. 1 & 3, Agaba, M. 1, Noyes, H. A
By: Chris Carr.
Physiology Of Parasites 13- Methods of immune evasion
Identification of gene networks associated with lipid response to infection with Trypanosoma congolense Brass A3; Broadhead, A2; Gibson, JP1; Iraqi, FA1,
African trypanosomiasis (Sleeping Sickness)
B Cells: Regulatory (Bregs)
Human African Trypanosomiasis (HAT): Not Something to Sleep On
Rennie, C1 Noyes,HA2 Kemp, SJ2 Hulme, H1 Brass, A1,3 Hoyle, DC4
Congenic mice reveal effect of SNP, genomic rearrangements and expression variation on genome wide gene expression Introduction There is still no well-defined.
Unit 4 - Immunology and Public Health
Figure 3. Active enhancers located in intergenic DMRs
Immunology & Public Health
Cholesterol Synthesis, Transport, & Excretion
School of Pharmacy, University of Nizwa
Linkage Studies (1a).
Rennie C1 Hulme H2 Fisher P2 Hall L3 Agaba M4 Noyes HA1 Kemp SJ1,4
Congenic mice reveal effect of SNP, genomic rearrangements and expression variation on genome wide gene expression Introduction There is still no well-defined.
Position specific effect of SNP on signal ratio from long oligonucleotide CGH microarrays; most single probe aberrations represent genuine genomic variants.
Sleeping sickness Clinical Microbiology and Infection
Control of tsetse Trypanosome Disease in African Country
Trypanosomes We will discuss two groups.
Elements of the Immune System: Complement
Erythroid differentiation
Erythroid differentiation
Volume 33, Issue 1, Pages (July 2010)
Volume 40, Issue 3, Pages (March 2004)
INTRODUCTION Nutrigenomics Dr. Muhamad Firdaus
School of Pharmacy, University of Nizwa
Daniel J. Rader, Ellen Puré  Cell Metabolism 
Volume 93, Issue 5, Pages (May 1998)
Evan G. Williams, Johan Auwerx  Cell 
Volume 14, Issue 2, Pages (August 2013)
Volume 18, Issue 3, Pages (March 2003)
Daniel J. Rader, Ellen Puré  Cell Metabolism 
Volume 14, Issue 3, Pages (September 2013)
Volume 28, Issue 5, Pages (May 2008)
Figure 1: Breeding programme for generation of congenic mice
Lipoproteins   Macromolecular complexes in the blood that transport lipids Apolipoproteins   Proteins on the surface of lipoproteins; they play critical.
Volume 1, Issue 5, Pages (May 2005)
Presentation transcript:

Identification of gene networks associated with lipid response to infection with Trypanosoma congolense Brass A3; Broadhead, A2; Gibson, JP1; Iraqi, FA1, Kemp, SJ2; Musa, H1; Naessens, J1; Noyes, HA2; 1International Livestock Research Institute, P. O. Box 30709, Nairobi, Kenya 2School of Biological Sciences, University of Liverpool, L69 7ZB, UK 3Department of Computer Science, University of Manchester, UK The innate immune response controls infection African trypanosomes are best known for their extreme antigenic variation. They generate a new surface coat every seven to 14 days. Large numbers of antibodies are generated to the surface antigens, and control each wave of parasitaemia. However, the control of the disease appears to be T cell independent since the disease in T cell deficient mice is no worse than in wild type mice. Survival time after infection varies substantially between different inbred strains of mice and between different breeds of African cattle. We have mapped QTL associated with survival time in mice and with parasitaemia, anaemia and growth rate in cattle. Introduction Human African Trypanosomiasis (HAT) or sleeping sickness is caused by subspecies of the protozoan parasite Trypanosoma brucei. A very similar disease of cattle (nagana) is caused by Trypanosoma congolense. Both these parasites live in the blood stream and are fatal unless treated. Estimates of the number of humans infected vary widely but over 2 million are believed to be infected in The Democratic Republic of the Congo alone. The cattle disease has been estimated to cause economic losses of over 4 billion USD per year and effectively restricts cattle production to areas of Africa where numbers of the tsetse files that transmit the disease are low. The symptoms of infection are generally non-specific and include cachexia, fever, anaemia in cattle and neurological symptoms in humans. 20 40 60 80 100 120 1 10 19 28 37 46 55 64 73 82 91 109 118 127 136 145 154 163 172 181 190 199 208 217 226 235 244 253 262 271 280 Days Post Challenge % Survival C57BL6 AJ F2 AJ x C57BL6 X Percentage survival of AJ, C57/BL6 mice and F2 AJxC57/BL6 by number of days post challenge. A common mechanism controls HDL levels and Trypanosomiasis? QTL for survival post infection with T. congolense and for HDL levels have been fine mapped to chromosomes 1,5,16 and 17 (Mammalian Genome 2000 11:645-648 and Genome Research 2003 13:1654-1664). Two of these QTL on chromosomes One and Five overlap. Whilst there are many genes under these QTL it is possible that a common regulatory mechanism controls both phenotypes. Cholesterol levels correlate with survival after infection. Total cholesterol, HDL and LDL cholesterol and Triglycerides were all measured in infected mice which were maintained on high and low fat diets. HDL cholesterol and LDL cholesterol levels both tracked total cholesterol which is shown. Cholesterol levels declined after infection, and absolute levels correlated with susceptibility to infection. C57BL/6 mice which survive longest after infection had highest cholesterol levels and AJ mice which have the shortest survival time had the lowest cholesterol levels on both diets. There was an indication that the Balb/c mice on the high fat diet survived longer than the same mice on a low fat diet, but numbers were not sufficient to determine if this was significant. A further experiment is currently underway to specifically test the effect of high fat isocaloric diets on survival time. HDL QTL Trypanosomiasis QTL Cyp7a1 and SRB1 may regulate the differences in cholesterol levels. C57Bl/6 mice are known to have relatively high cholesterol levels and are a common model for atherosclerosis. Gene expression was measured on Affymetrix microarrays and a key difference in gene expression in cholesterol metabolism pathways was found in Cyp7a1 (cholesterol 7 alpha hydroxylase). Cyp7a1 is the rate limiting step in bile acid synthesis and cholesterol secretion. Relative expression of this enzyme was inversely correlated with cholesterol levels at four time points post infection. SRB1 is a selective cholesterol receptor. Over-expression of SRBI is correlated with to a reduction in plasma cholesterol and an increase in biliary cholesterol (Nature 1997 387:414-417). Plasma cholesterol increased in infected C57BL6 but not other strains at day 7 post infection (the peak of parasitaemia) and this correlated with a two fold drop in SRBI expression in C57BL/6 at this time, consistent with SRBI contributing to the increase in cholesterol in C57BL/6. SRBI is under the chromosome 5 QTL, as is ATP10d which may be involved in cholesterol export from macrophages and has a premature stop codon in C57BL6. Lipids and inflammation Cholesterol synthesis and inflammation are known to be linked by HmgCoA which is the key step in cholesterol and isoprenoid synthesis. Isoprenoids can regulate inflammatory / anti-inflammatory switch (Journal of Experimental Medicine 2006 203:401-412). AJ mice which have the lowest cholesterol levels and the weakest inflammatory response also had approximately two fold lower levels of HmgCoAr at all time points post infection (not shown). Overlay of gene expression post infection on macrophage gene networks indicates that the RXR/LXR transcription factors are down regulated in susceptible AJ mice at day 9 post infection (E on map). These are known to also be regulators of inflammation as well as lipid metabolism suggesting that these pathways may also be involved. E Conclusion Lipids are known to be involved in the control of trypanosomiasis in humans. There is a difference in lipid responses between susceptible and resistant mouse strains. There are also differences in inflammatory responses between mouse strains. The overlap of QTL for HDL and survival time post infection suggests that the lipids may be the key regulator of inflammation. This may be via PPAR, LXR and RXR transcription factors or via another as yet unidentified mechanism.