Mouse Model Neuro-Facial Dysmorphology:

Slides:



Advertisements
Similar presentations
University of Minho School of Engineering Institute for Polymer and Composites Uma Escola a Reinventar o Futuro – Semana da Escola de Engenharia - 24 a.
Advertisements

NA-MIC National Alliance for Medical Image Computing Validation of Bone Models Using 3D Surface Scanning Nicole M. Grosland Vincent A.
IMAGE QUALITY.
Can Changes In Daily Body Weight Be Used For Early Pregnancy Detection In C57BL/6 Mice? Nicole Libal, BS, RLAT; Ling Zhang, MD; Sarah L. Mader, BS; Stephanie.
RAD309 Patient Dose.
IMAGE QUALITY NOISE LINEARITY CROSS-FIELD UNIFORMITY IMAGE ARTIFACTS.
Surface Reconstruction from 3D Volume Data. Problem Definition Construct polyhedral surfaces from regularly-sampled 3D digital volumes.
Arizona’s First University. Feasibility of Image-Guided SRS for Trigeminal Neuralgia with Novalis.
(Semi)Automatic Quantification of the Internal Elastic Lamina Fenestrae in Remodeling Arteries A Feasibility Study Master Thesis Harald Groen.
tomos = slice, graphein = to write
Image Guided Surgery in Prostate Brachytherapy Rohit Saboo.
CT Quality Control for CT Scanners. Quality Control in CT A good idea? Yes Required for accreditation? Sometimes Improves image quality? Sometimes Depends.
QIBA Quantitative CT: Towards routine quantitative CT in obstructive lung disease JP Sieren 1, PF Judy 2, DA Lynch 3, JD Newell 3, HO Coxson 4 and EA Hoffman.
Научно-практический центр протонной лучевой терапии и радиохирургии (Москва-Дубна) A SYSTEM FOR MEASUREMENT OF A THERAPEUTIC PROTON BEAM DOSE DISTRIBUTION.
QIBA CT Volumetrics - Cross-Platform Study (Group 1C) December 23, 2009 CT Cross-platform Sizing of Phantom Lesions Quantitative Imaging Biomarker Alliance.
Evaluation of the Performance of the Fast Scanning Platform of an OCT System Malcolm Heard 1, Miguel Herrera 1, Geoffrey Ibbott 1 1 Department of Radiation.
Use and Re-use of Facial Motion Capture M. Sanchez, J. Edge, S. King and S. Maddock.
QIBA CT Volumetrics - Cross-Platform Study (Group 1C) September 2, 2009 Interclinical Comparison of CT Volumetry Quantitative Imaging Biomarker Alliance.
Single Photon Emission Computed Tomography
QIBA CT Volumetrics - Cross-Platform Study (Group 1C) March 18, 2009 Interclinic Comparison of CT Volumetry Quantitative Imaging Biomarker Alliance.
CT QUALITY MANAGEMENT. SPATIAL RESOLUTION CONTRAST RESOLUTION NOISE IMAGE ARTIFACTS RADIATION DOSE.
Part No...., Module No....Lesson No
MultiModality Registration Using Hilbert-Schmidt Estimators By: Srinivas Peddi Computer Integrated Surgery II April 6 th, 2001.
U N I V E R S I T Y O F S O U T H F L O R I D A “ Automated Signal Processing for Data Obtained for Core Body Temperature Measurements ” Undergraduate.
Accuracy, Reliability, and Validity of Freesurfer Measurements David H. Salat
Flair development for the MC TPS Wioletta Kozłowska CERN / Medical University of Vienna.
Adapting A Clinical Medical Accelerator For Primary Standard Dosimetry
Applications and Rendering pipeline
Sunday Case of the Day How does the presence of the object impact patient dose? A. Increases by 20% - 50% B. Increases by 3% - 5% C. No Change D. Decreases.
-42 Impact of signal non-repeatability on spectral CT images
Testing of FASD Therapeutic Agents in Perinatal Mouse Models
CT Multi-Slice CT.
Computed Tomography Basics
Mapping the Brain the Face and Neurocognitive
Mouse Femoral Neck Architecture Determined by MicroCT Reflects
Treatment Plan Validation of the Xoft AXXENT™ X-ray Source
UNIVERSITI SAINS MALAYSIA 2016
Neuro Best Contrast Filter for Head CT
3D Facial Imaging Project
Mouse Model Neuro-Facial Dysmorphology:
(a) High density pores : Nf = 1.99×105
Shanzhou Niu1, Gaohang Yu2, Jianhua Ma2, and Jing Wang1
CSc 8820 Advanced Graphics Algorithms
3D Facial Imaging Project
Charles Goodlett Bruce Anthony: Sophia Liang Yun: Huisi Ai
Progress Report U Aims 1 & 2: To test L-NAP and other compounds for therapeutic potential in preventing alcohol-induced damage to the cerebellum.
Tensor-based Surface Modeling and Analysis
Reverse Engineering Convert STL mesh data to a Solid Edge part model and speed up Product Development. Restricted © Siemens AG 2016 Realize innovation.
Exhibit Number: C19 Evaluation and Reduction of Head Computed Tomography Dose Because of full frame graphic use title slide sparingly because too many.
Quantification of Tumor Burden in a Genetically Engineered Mouse Model of Lung Cancer by Micro-CT and Automated Analysis  Kai H. Barck, Hani Bou-Reslan,
Osteopenia in Cftr-deltaF508 mice
QC And NEMA In The Nuclear Arena
Volume 23, Issue 9, Pages (September 2015)
Detecting Gray Matter Maturation via Tensor-based Surface Morphometry
Volume 22, Issue 1, Pages 8-16 (January 2018)
David J. Brenner, Maria A. Georgsson  Gastroenterology 
Radiological Society of North America
Thursday Case of the Day
C-13 O-arm Scatter Cloud.
Roshan S Livingstone and Benedicta R Department of Radiology
7th Annual STEMtech conference
X-ray Irradiator at UCSF MB
MultiModality Registration using Hilbert-Schmidt Estimators
Schematic representation of experimental design for BSp dietary treatments. Schematic representation of experimental design for BSp dietary treatments.
Chapter 1 Section 4 Tools and Procedures
Computed Tomography (C.T)
Computed Tomography (C.T)
The responses of H292 and A549 lung cancer xenografts to hypofractionated radiation were enhanced by the ketogenic diet. The responses of H292 and A549.
Biological variation is more than random noise
Presentation transcript:

Mouse Model Neuro-Facial Dysmorphology: Translational & Treatment Studies Progress since September 1, 2007 Feng C. Zhou Charles Goodlett Yun Liang Shiaofen Fang Bruce Anthony

Specific Aims Aim 1. To advance the understanding of sources of variation in abnormal facial development induced by prenatal alcohol exposure as a function of the dose and developmental timing of alcohol exposure in a C57BL/6 mouse model. Aim 2. To determine longitudinally the extent of brain structural and neuro-facial abnormalities as a function of the dose and developmental stage of alcohol exposure. Aim 3. To determine the extent to which the Neurotrophic peptides NAP/SAL will provide long-term protection against alcohol-induced neuro-facial dysmorphology and neurobehavioral deficits.

1. Mouse Model for Dose and Timing of Alcohol Exposure Standardization of C57BL6 mice lines from Halan and Jackson breeder used in Drs. Zhou and Sulik’s laboratories (a) Drinking level—Bruce Anthony (b) Teratogenesis – Scott Parnell

Protocol for Liquid Diet Repeated Deprivation 1. Animals housed in temperature controlled 12-hour reverse light/dark cycle (10am-10pm) 2. Prior to treatment all animals have ad lib chow and water 2 weeks after arrival. 3. From the beginning of treatment all animals housed individually, ages 12-14 weeks Days 1 2 16 20 - 37 E7 E11-E16 P7 and P21 RX 2.4% 4.8 or 3.6 % Alc Chow /Mating 3.6 or 4.8 % alc Isolate or Postnatal surrogate Alcohol groups Pre Treatment Alcohol Pair Fed Control RX 2.4% 4.8 or 3.6 % Alc Chow/Mating 3.6 or 4.8 % Dex . Isolate or Postnatal surrogate Days 1 2 16 20 - 37 E7 E11-E16 P7 and P21 Total Pair Fed Control RX ~2.4% 4.8 or 3.6 % Dex Chow/Mating ~3.6 or 4.8 % . Isolate or Postnatal surrogate Days 1 2 16 20 - 37 E7 E11-E16 P7 and P21 Control RX Chow throughout Mating Chow throughout Isolate or Postnatal surrogate Days 1 20 - 37 E11-E16 P7 and P21

* Statistical Significant N=6 Mating **** *** ** * * Mating Mating Harlan C57Bl/6 Jackson C57Bl/6 Treatment Paradigm 1. Pre treatment 2.4% (x2days) then 4.8 % 14 days. 2. 16 day deprivation and mating 3. E7-E18 4.8% Alc Averages: Harlan pre depreviation 26.6 Avg daily Harlan post deprivation 26.6 Avg daily Jax pre deprivation 22.6 Avg daily Jax post deprivation 22.4 Avg Daily * Statistical Significant N=6 Mating

N=20 pre-treatment/ 10 post treatment * Statistically Significant * * * * * * Mating Mating Harlan C57Bl/6 Jackson C57Bl/6 * * * * * * * * * * * * * * Mating Parnell et al. Paradigm 1. Pre treatment 2.4% (x2days) then 4.8 % 14 days. 2. 4 day deprivation /Max 21 day mating 3. E7-E9 4.8% Alc Averages: Harlan pre deprivation 25.7 +/-0.75 Avg daily Harlan post deprivation 22.3 +/-1 Avg daily Jax pre deprivation 23.8 +/-0.75 Avg daily Jax post deprivation 20.0 +/-1 Avg Daily N=20 pre-treatment/ 10 post treatment * Statistically Significant

2. Facial dysmorph. Analysis A. Microvideo imaging analysis Moving from 2D to 3D --- Shiaofen Fang B. MicroCT imaging analysis ---Yun Liang

Moving from previous 2D to 3D analysis A. Micro-Video Imaging for 3-D Moving from previous 2D to 3D analysis 1. Set of 2D Images 180o at 4o angles 2. Covert each to a binary image to isolate features ==> ==> 3. Project each image onto a 3D volume and carve (remove) non-feature parts ==> 4. 3D model (polygon mesh)

1. 3D geometry and turn-table Collecting Set of 2D Images (180o at 4o angles) M  Ci Axis Image i C1 Image 1

Image Segmentation and 3D Rendering 2. Convert to binary images (2D processing) 3. Automated noise removal and filling eye area (2D) 4. Construct 3D model (polygon mesh) and surface rendering (3D)

Improvements in Microvideo 1. New rotor for Implementation of step motor a. Exact definition of degree changes b. Control of angle progression in capture 2. Images scaled within software a. To ensure proper aspect ratio b. To maintain optimal dimensions software allows 3. Projection algorithm re-done a. Projection done with built-in functions for consistency and quality assurance between users.

B. Micro-CT for Craniofacial Analysis —including facial & skeletal imaging co-registration Evaluate facial and cranial bone dysmorphology in postnatal mice (P7 and P21) using 3D images obtained by a Micro-CT. Identify anthropometric geometries and features to differentiate subjects with alcohol exposure. Correlative studies of facial and skeletal features

Components of MicroCT System Imaging Volume Detector X-Ray Source Opening operture 8cm hole opening Curve arrow --rotation EVS RS-9

Imaging Techniques Scan Resolution Width Length Volume   Scan Resolution Width Length Volume Modes_____(m)_____ (mm)__ (mm)__ Dimensions 1x1 23 36.8 36.8 1600x1600x1600 (~ 2 hours scan over 1000 slices !!) 2x2 46 78.48 41.76 1750x1750x929 4x4 92 78.48 41.76 872x872x464 X-ray output kVp= 50 kVp, I= 1 mA, t= 100 msec , and 276 angular views in a single frame. A total of 8 frames Recon-Resolution Image Quality Radiation Dosage_ 46 m ~ 80-100 HU (noise) 0.8 Gy 276 angular view--- 46 micro is becase merge two slide for analysis Hu ---Hunfiled unit nioce ~ 10% measurment data (it is good enough for bone study) Gy---Geore / kg

MicroCT Study Procedure Subjects: P7 and P21 C57BL/6 mice, Control vs Liquid Alcohol diet treated. Anesthesia: an induction chamber with Isoflurane levels of 1.5 % at a initially flow rate of 0.8-1.2 liter/min followed by a maintenance Isoflurane rate of 0.5 liter/min . CT number Calibration: QA phantom with water, air, acyrilc, bone (SB3) inserts Image Analysis: (1) Semi-automatic: Segmentation of skull with thresholding, followed by manually refining in slice-by-slice way; (2) Volume rendering (shaded-surface-display); (3) Metric measurement with volume/slice relating tool. Analyzed using “MxView” (courtesy of Philips Medical Systems).

Thresholding Sb3 Air water QA Phantom Size of phamtom---1 inch diameter (a model to mimic biological materials. QA quality assurance SB3--for bone meaneral density is about density for skull cortical bone

Relate Slice/Volume

Anthropometric Measurement

Comparative analysis

MicroCT- Surface-Skull fusion

a b c d @ Alcohol Control Figure 3D segmentation of developing craniofacial bone in P1 C57BL6 mice. The threshold is set at 20% of standard cortical bone density (BMD=1073 kg/m3). It is clearly shown that the nasal bone (@) growth among others is retarded in the 25%EDC alcohol-treated group (a, b) as compared with that of two P1 pair-fed control pups (c, d).

There is notable difference in nasal bone development? Compare 3 and 3 animals (FAS vs control)