Evaluation of Field Book: An open-source Android app for collecting phenotypic data in a peach breeding program Ksenija Gasic*, Trevor Rife, Jesse Poland,

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Presentation transcript:

Evaluation of Field Book: An open-source Android app for collecting phenotypic data in a peach breeding program Ksenija Gasic*, Trevor Rife, Jesse Poland, Sook Jung, Kate Evans, Nnadozie Oraguzie, Lisa De Vetter, Cameron Peace, Mercy Olmstead and Dorrie Main

1970 2013 2008 2014

Designed for plant scientists Field Book Java Low-cost hardware Tablet-optimized Free Open source Designed for plant scientists Digital and dynamic data collection

Import Format_Example plot_id range plot seed_id seed_name pedigree 13RPN00001 1 12GHT00001B Kharkof 13RPN00002 2 12GHT00002B Roughrider 13RPN00003 3 12GHT00003B Nuplains 13RPN00004 4 12GHT00004B Nekota 13RPN00005 5 11ASH90002B G980172W SW/IKE 13RPN00006 6 G980723 94CGT-96HV (BULK SELECTION) 13RPN00007 7 G980926 W 95CGT-96WD (BULK SELECTION) 13RPN00008 8 NW97S412-1 KS87809-10/ARAPAHOE

Import Format_ Peach Field_ID Row Tree Name R_T NVB_1_1-3_KV970512-501 1_3 KV970512-501 R1T1_3 NVB_1_7-9_KV930465-301 7_9 KV930465-301 R1T7_9 NVB_1_10-12_KV980677-801 10_12 KV980677-801 R1T10_12 NVB_1_13-15_KV980316-701 13_15 KV980316-701 R1T13_15 NVB_1_16-18_KV930386-401 16_18 KV930386-401 R1T16_18 NVB_1_19-21_KV980330-601 19_21 KV980330-601 R1T19_21 NVB_1_22-24_Sweet Dream 22_24 Sweet Dream R1T22_24 NVB_1_25-26_Galaxy 25_26 Galaxy R1T25_26 NVB_1_27-29_China Pearl 27_29 China Pearl R1T27_29 NVB_1_36-38_Intrepid 36_38 Intrepid R1T36_38 NVB_1_39-40_Carolina Gold 39_40 Carolina Gold R1T39_40 NVB_1_42-44_Summer Gold 42_44 Summer Gold R1T42_44 NVB_1_45-47_Belle of Georgia 45_47 Belle of Georgia R1T45_47 NVB_1_49-50_Flameprince 49_50 Flameprince R1T49_50 NVB_2_25-27_Late Large 23 2 25_27 Late Large 23 R2T25_27 NVB_2_22,24_5D Big 22,24 5D Big R2T22,24 NVB_2_19-21_9 Ball 9 Ball R2T19_21

Create traits within the app

Import Format plot_id range plot seed_id seed_name pedigree 13RPN00001 12GHT00001B Kharkof 13RPN00002 2 12GHT00002B Roughrider 13RPN00003 3 12GHT00003B Nuplains 13RPN00004 4 12GHT00004B Nekota 13RPN00005 5 11ASH90002B G980172W SW/IKE 13RPN00006 6 G980723 94CGT-96HV (BULK SELECTION) 13RPN00007 7 G980926 W 95CGT-96WD (BULK SELECTION) 13RPN00008 8 NW97S412-1 KS87809-10/ARAPAHOE

Advanced Settings Tutorial DataGrid Next entry without data Sound when primary order changes Go to unique id via barcode Disable left/right entry arrow if no data Cycling traits advances to next entry

Export Formats Database Table plot_id seed_id seed_name trait value person timestamp 13RPN00001 11ASH90002B NW97S412-1 height 75 trevor_rife 2014.01.09 13:52:32 13RPN00002 Kharkof 45 2014.01.09 13:52:33 13RPN00003 12GHT00002B Roughrider disease Yellow 2014.01.09 13:52:39 13RPN00004 12GHT00003B Nuplains Purple G980172W lodging 27 2014.01.09 13:52:59 Table plot_id seed_id seed_name height disease lodging 13RPN00001 12GHT00001B Kharkof 14 Blue 42 13RPN00002 12GHT00002B Roughrider 23 Yellow 51 13RPN00003 12GHT00003B Nuplains 63 Purple 75 13RPN00004 12GHT00004B Nekota Orange 57 13RPN00005 11ASH90002B G980172W 15 Black 27

Updates in Progress Updated interface with phone support Field management Updated map Repeated measurements External database integration (IBP, T3, CassavaBase) Ontology integration Trait plugin framework

github.com/trife/field-book www.wheatgenetics.org/field-book

Acknowledgements McKnight Foundation Rebecca Nelson Jesse Poland and lab Translators: Irazema Fuentes-Bueno, Sandra Dunckel, Shuangye Wu, Narinder Singh, Daljit Singh, Erena Edae, Tatiana Danilova, Rodrigo Pedrozo, Cristiano Lemes da Silva, Sophie Bouchet, Hiroyoshi Iwata, Goro Ishikawa, Khaled El-Shamaa

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