Electron Crystallographic Study of Incommensurate Modulated Structures

Slides:



Advertisements
Similar presentations
Electron Crystallographic Study of Bi-based Superconductors using Multi-dimensional Direct Methods Electron Crystallographic Study of Bi-based Superconductors.
Advertisements

Diffraction Basics Cora Lind-Kovacs Department of Chemistry & Biochemistry The University of Toledo Toledo, OH 43606
What is diffraction? Diffraction – the spreading out of waves as they encounter a barrier.
X-Ray Crystallography
Dedicated to the memory of Z.G.Pinsker. (on the occasion of his 100 th anniversary ) ELECTRON DIFFRACTION STRUCTURE ANALYSIS, PART 1. Vera KLECHKOVSKAYA.
Anandh Subramaniam & Kantesh Balani
Crystallography and Diffraction Techniques Myoglobin.
Structure of thin films by electron diffraction János L. Lábár.
Structure determination of incommensurate phases An introduction to structure solution and refinement Lukas Palatinus, EPFL Lausanne, Switzerland.
THE BEHAVIOUR OF LATTICE PARAMETERS IN Bi-Sn-Zn M. Helena Braga, J. Ferreira, L. F. Malheiros DEF – FEUP, INETI, DEMM – FEUP.
Tuesday, May 15 - Thursday, May 17, 2007
TEM- What is it?. Diffraction in the Transmission Electron Microscope Vidhya Sagar Jayaseelan.
Direct Methods By Fan Hai-fu, Institute of Physics, Beijing Direct Methods By Fan Hai-fu, Institute of Physics, Beijing
Exercise: Indexing of the electron diffraction patterns
Features Direct Methods for Image Processing in HREM of Solving Aperiodic Structures Searching Algorithm for Finding Modulation waves in 4D Fourier.
Protein Structure Determination Part 2 -- X-ray Crystallography.
Define the Crystal Structure of Perovskites
1. Diffraction intensity 2. Patterson map Lecture
Azerbaijan National Academy of Sciences Institute of Radiation Problems New Challenges in the European Area: Young Scientist's1st International Baku Forum.
~ Crystallography ~ Prof. Yu Wang Office: A507 Telephone: ~
What’s a modulated structure ?
Crystallography and Diffraction. Theory and Modern Methods of Analysis Lectures Electron Diffraction Dr. I. Abrahams Queen Mary University of London.
Conventions Special aspects of the scattering of high- energetic electrons at crystals Axel Rother*, Kurt Scheerschmidt**, Hannes Lichte* *Triebenberg.
Methods in Chemistry III – Part 1 Modul M.Che.1101 WS 2010/11 – 8 Modern Methods of Inorganic Chemistry Mi 10:15-12:00, Hörsaal II George Sheldrick
Free download with instructions
X-ray diffraction X-rays discovered in 1895 – 1 week later first image of hand. X-rays have ~ 0.1 – few A No lenses yet developed for x-rays – so no possibility.
Protein Structure Determination Lecture 4 -- Bragg’s Law and the Fourier Transform.
Solving crystals structures from HREM by crystallographic image processing Xiaodong Zou Structural Chemistry, Stockholm University.
Pattersons The “third space” of crystallography. The “phase problem”
Polymers (see Roe: Methods of X-ray and Neutron Scattering in Polymer Science (2000)) Polymers (see Roe: Methods of X-ray and Neutron Scattering in Polymer.
Atomic structure model
COHERENT BREMSSTRAHLUNG OF RELATIVISTIC ELECTRONS UNDER THE EXTERNAL ACOUSTIC FIELD A.R. Mkrtchyan Institute of Applied Problems in Physics, NAS, Armenia.
Methods in Chemistry III – Part 1 Modul M.Che.1101 WS 2010/11 – 9 Modern Methods of Inorganic Chemistry Mi 10:15-12:00, Hörsaal II George Sheldrick
Fourier transform from r to k: Ã(k) =  A(r) e  i k r d 3 r Inverse FT from k to r: A(k) = (2  )  3  Ã(k) e +i k r d 3 k X-rays scatter off the charge.
Electron Crystallographic Study of Incommensurate Modulated Structures Fan, Hai-fu Institute of Physics, Chinese Academy of Sciences, Beijing, China Fan,
Crystal Structure and Crystallography of Materials Chapter 13: Diffraction Lecture No. 1.
SHKim 2007 Lecture 4 Reciprocal lattice “Ewald sphere” Sphere of reflection (diffraction) Sphere of resolution.
X-ray Diffraction & Crystal Structure Analysis
Seminar on X-ray Diffraction
V.O. Yukhymchuk, V.M. Dzhagan, V.P. Klad’ko,
Diffraction in TEM Janez Košir
Ch.4 Atomic Structure of Solid Surfaces.
Organic Chemistry Lesson 21 X-ray crystallography.
What’s a modulated structure ?
OASIS-2004 A direct-method program for
Diffraction from cystals
Solving Crystal Structures
TEM (Transition Electron Microscope)
X-ray Scattering from Thin Films
Protein Structure Determination
Diffraction Basics Cora Lind-Kovacs
Diffraction Interference of waves creates a diffraction pattern.
Atomically thin two-dimensional organic-inorganic hybrid perovskites
Nobel Laureates of X Ray Crystallography
Diffraction T. Ishikawa Part 1 Kinematical Theory 1/11/2019 JASS02.
What use is Reciprocal Space? An Introduction
Rubén Díaz-Avalos, Donald L.D. Caspar  Biophysical Journal 
Electron diffraction Øystein Prytz.
Solving Equations 3x+7 –7 13 –7 =.
Improved Structures of Full-Length p97, an AAA ATPase: Implications for Mechanisms of Nucleotide-Dependent Conformational Change  Jason M. Davies, Axel.
The In Situ Supermolecular Structure of Type I Collagen
Iterative Phase Retrieval (Jianwei Miao & David Sayre)
By Fan Hai-fu, Institute of Physics, Beijing
Parameter Space for Amorphous Oxide Semiconductors (AOSs)
Counting Atoms in Unit Cells:
Counting Atoms in Unit Cells:
Chapter 16: Electron Diffraction
The In Situ Supermolecular Structure of Type I Collagen
A. The Solid State Classification of Solid Structures
Presentation transcript:

Electron Crystallographic Study of Incommensurate Modulated Structures Fan, Hai-fu Institute of Physics, Chinese Academy of Sciences, Beijing, China

What’s a modulated structure ? Muti-dimensional direct methods of solving modulated structures Incommesurate modulation in Bi-based supercondutors from electron crystallography

What’s a Modulated Structure ? T = 0 (mod t) or MOD (T, t) = 0 Commensurate modulation Þ superstructures T ¹ 0 (mod t) or MOD (T, t) ¹ 0 Incommensurate modulation Þ incommensurate structures T

Schematic diffraction pattern of an incommensurate modulated structure b* q

Conclusion In reciprocal space: The diffraction pattern of an incommen-surate modulated crystal is the projection of a 4- or higher-dimensional weighted lattice In direct space: An incommensurate modulated structure is the “hypersection” of a 4- or higher-dimensional periodic structure cut with the 3-dimensional physical space

Representation of one-dimensionally modulated incommensurate structures Lattice vectors in real- and reciprocal- space

Structure-factor formula Modulated atoms situated at their average positions

Modified Sayre Equations in multi-dimensional space

incommensurate modulated structures Strategy of solving incommensurate modulated structures i) Derive phases of main reflections using ii) Derive phases of satellite reflections using iii) Calculate the multi-dimensional Fourier map iv) Cut the resulting Fourier map with the 3-D ‘hyperplane’ (3-D physical space) v) Parameters of the modulation functions are measured directly on the multi-dimensional Fourier map

Electron Crystallographic Study of Bi-based Superconductors using Multi-dimensional Direct Methods

Why Electrons ? 1. Electrons are better for studying minute and imperfect crystalline samples 2. Electron microscopes are the only instrument that can produce simultaneously EM’s and ED’s for the same crystalline sample at atomic resolution 3. Electrons are better for revealing light atoms in the presence of heavy atoms

Scattering of X-rays and Electrons by Different Elements Bi Sr Ca Cu X-rays Relative scattering power Sinq /l ~ 0.31 Electrons O O

Bi-based Superconductors Bi2Sr2Can-1CunO2n+4+x n = 1 n = 2 n = 3 Bi-2201 Bi-2212 Bi-2223 Bismuth bi-layer Bi-O Bi-O Bi-O Sr-O Cu-O Ca-O c Perovskite layer Sr-O Cu-O Ca-O Sr-O Cu-O Bi-O Bismuth bi-layer Bi-O Bi-O

Electron diffraction analysis of the Bi-2223 superconductor Space group: P [Bbmb] 1 -1 1 a = 5.49, b = 5.41, c = 37.1Å; q = 0.117b* *The average structure is known*

Bi-2223 [100] projected potential Space group: P [Bbmb] 1 -1 1 a = 5.49, b = 5.41, c = 37.1Å; q = 0.117b* RsymM = 0.12 (Nref. =42) RsymS = 0.13 (Nref. = 70) Rm = 0.16 Rs = 0.17

Bi-2223 4-dimensional metal atoms a3 a4 cut at a2 = 0 and projected down the a1 axis Space group: P [Bbmb] 1 -1 1 a = 5.49, b = 5.41, c = 37.1Å; q = 0.117b* a1 = a, a2 = b - 0.117d, a3 = c, a4 = d

Image Processing of Bi-2212 EM image from Dr. S. Horiuchi Space group: N [Bbmb] 1 -1 1 a = 5.42, b = 5.44, c = 30.5Å; q = 0.22b* + c* FT FT-1 Phase extension

Image Processing of Bi-2212 (continued) 8 4 1 Bi Sr Cu Ca Original image Enhanced image c Oxygen in Cu-O layer b

O atoms on the Cu-O layer Electron diffraction analysis of Bi-2201 Space group: P[B 2/b] -1]; a = 5.41, b = 5.43, c = 24.6Å, b = 90o; q = 0.217b* + 0.62c* O atoms on the Cu-O layer RT = 0.32 Rm = 0.29 RS1 = 0.29 RS2 = 0.36 RS3 = 0.52 Bi-O Sr-O Cu-O b c O (extra)

Experimental B and M Bi-2201 Influence of thermal motion (B) and Modulation (M) to the dynamical diffraction B set to zero B,M set to zero M set to zero

Bi-2201 The effect of sample thickness ~300Å ~200Å ~5Å ~100Å Oxygen in Cu-O layer Bi-O Sr-O Cu-O Extra oxygen