ZooBank: Scope of Registry

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Presentation transcript:

ZooBank: Scope of Registry Nomenclatural Acts - Acts establishing new species-, genus- and family-group names in Zoology - Lectotypifications/Neotypifications, Emendations, First reviser, etc. Publications - As defined in Article 8 of the ICZN Code. Authors - As authors of registered publications - ZooBank content providers Type Specimens - Integral to nomenclature; cross-linked to Museums

ZooBank: Content Launch - 1 January 2008, 00:00:00GMT - 250th Anniversary of Systema Naturae 10th Edition Retrospective Content - 4,819 Names established in Linnaeus, 1758. Prospective Content - 5 New species of Chromis (Zootaxa) - Johnson et al.; Deans & Kawada (Zootaxa) - Fisher & Smith (PLoS ONE) - Assmann et al.; Aken'Ova et al.; Hinojosa-Díaz (ZooKeys)

ZooBank: Timeline 2005 - Initial concept announced in Nature, BZN 2007 - Initial development, implementation of LSIDs 2008 - Official Launch (1 January 2008) - Addition of Zootaxa content - Development & testing of online registration 2008-2010 - Content expansion, refinement, public discussion 2011 - Two NSF projects (GNA, BiSciCol) 2012 - ZooBank 2.0; Publication of Amendment to the Code

Search Authors (JSON) Search Authors (HTML) Search References (HTML) Search References(JSON) Search Taxon Name Usages (JSON) (HTML) Author Publication Histogram Get Identifiers Other Services?

ZooBank: Next Steps XML Batch Submission STEP 1 - Publisher submits XML-formatted document to ZooBank service STEP 2 - ZooBank “automagically” registers what it can, and prompts submitter to disambiguate as needed STEP 2a - ZooBank registers disambiguated records STEP 3 - After publication, publisher submits updates to ZooBank (Date, Pages, etc.) via same XML schema

ZooBank: Next Steps Bulk Import - Taxonomic Databases (HNS, Sherborn, Rod Page dataset, Hexacoralia, Scorpions, Diptera, etc.) - Literature Databases (BHL, Sherborn, Smithsonian, various publishers, etc.) Tighter Integration with Other Projects - BHL, CoL, IF, IPNI, BiSciCol, iDigBio, Filtered Push, PLAZI, Vibrant, FishBase, etc. Robust Taxonomic Services - Museum collections, Biodiversity Data Management