Evolution of cellulolytic activity in Streptomyces

Slides:



Advertisements
Similar presentations
Figure 7.1 Genomes 3 (© Garland Science 2007) Figure 7.2 Genomes 3 (© Garland Science 2007)
Advertisements

Transcriptional profiling I – microarrays and proteomics
1. How does conjugation work? Sex in Bacteria How do bacteria exchange DNA.
Strategies to identify the Main Idea. Step One: Read the entire text. Step Two: Read each paragraph and find the main idea of the single paragraph. Step.
Test Title Test Content.
Higher Biology Revision
Enzyme capacities to decompose plant-biomass in microbial symbionts associated with fungus-growing termites Rafael R. da Costa, Haofu Hu, Bo Pilgaard,
BRC Science Highlight Co-solvent System for Sugar Production from Lignocellulosic Biomass Using Biomass Derived γ-valerolactone Objective To improve ease-of-use.
BRC Science Highlight Fungus-cultivating termites exhibit strikingly rapid and efficient degradation of woody biomass Objective Characterize the natural.
BRC Science Highlight Plants with different lipid acyl composition demonstrate divergent yet co-evolved lipid transport components Objective To develop.
BRC Science Highlight Cover Crops and Pest Suppression in Annual Maize Bioenergy Cropping Systems Objective To determine the impact of a winter cover crop.
BRC Science Highlight Many genomic positions in switchgrass contribute to flowering time, a major biomass yield determinant Objective Gain a better understanding.
Fig. 1. — The life cycle of S. papillosus. (A) The life cycle of S
BRC Science Highlight Fine-tuned identification of glycoside hydrolase specificity on plant cell walls Objective Identify the substrate preferences and.
BRC Science Highlight Suppression of the lignin biosynthetic gene CCR1 results in decreased lignin recalcitrance and increased digestibility Objective.
Design of biofuel supply chains with regional depots
BRC Science Highlight Mechanism of Ionic Liquid Toxicity and Rational Engineering of a Tolerant Yeast Strain Objective To identify genetic determinants.
BRC Science Highlight Dynamics of gene expression during development and expansion of vegetative stem internodes of bioenergy sorghum Objective Conduct.
BRC Science Highlight Mechanism for Increased Reaction Rate of Acid-Catalyzed Biomass Conversion in GVL solvent Objective To determine how polar solvents.
BRC Science Highlight Improved understanding of lignin recalcitrance by defining and quantitatively determining lignin dimers Objective The analysis of.
Transcriptional analysis of flowering time in switchgrass
BRC Science Highlight Saccharification of thermochemically pretreated cellulosic biomass using native and engineered cellulosomal enzymes Objective To.
BRC Science Highlight WRINKLED1, a key regulator of oil biosynthesis, also affects hormone homeostasis Objective WRINKLED1 (WRI1) is a key transcriptional.
BRC Science Highlight OptSSeq: High-Throughput Sequencing Readout of Growth Enrichment Defines Optimal Gene Expression Elements Objective Designing synthetic.
BRC Science Highlight Altering carbon allocation in hybrid poplar impacts cell wall growth and development Objective In this study we test the hypothesis.
Biology II Learning Target Questions
Convergent Evolution: Gene Sharing by Eukaryotic Plant Pathogens
NISEE 2018 PAPER TITLE First International Conference
Biomass composition and lignin chemistry of energy sorghum
The Post-genomic Era of Trichoderma reesei: What's Next?
Evolution of genes involved in regulating flowering time in grasses
A. Moya, R. Gil, A. Latorre  Clinical Microbiology and Infection 
BRC Science Highlight Discovering enzymes responsible for biodegradation of lignin to release high-value monomeric aromatic compounds Objective Demonstrate.
BRC Science Highlight Hotspots of soil N2O emission enhanced by water absorption by plant residue particles Objective To understand how factors known to.
The Evolution of Venom by Co-option of Single-Copy Genes
4th International Conference on Sustainable Development
BRC Science Highlight Plants have convergently evolved to use “zips” (chemically labile ester linkages) in their lignin polymers Objective Survey a set.
Nitzan Koppel, Emily P. Balskus  Cell Chemical Biology 
Sarajevo, Bosnia and Herzegovina
Mutations that alter the bacterial cell envelope increase lipid production BRC Science Highlight Objective Microbial lipids are a potential replacement.
BRC Science Highlight Next-generation ammonia pretreatment enhances cellulosic biofuel production Objective A new liquid ammonia to improve the deconstruction.
Unit 0- Evolution, themes of biology, and scientific inquiry
MicroRNAs: Hidden in the Genome
BRC Science Highlight Developmental regulation of processes, pathways, and genes that affect stem growth and composition in sorghum Objective Obtain information.
BRC Science Highlight Improved understanding of lignin recalcitrance by defining and quantitatively determining lignin dimers Objective The analysis of.
BRC Science Highlight Lignocellulosic biomass conversion residue transformed into medium-chain fatty acid bioproducts Objective Investigate the potential.
BRC Science Highlight Process and field-scale ethanol yields of five lignocellulosic feedstocks Objective In this study, GLBRC scientists investigated.
5th International Conference on Engineering and Natural Science
Environmental Science 5e
Biological cleavage of lignin bonds
BRC Science Highlight Discovery of a new type of bacterial enzyme able to cleave bonds in lignin Objective Expand our knowledge of enzymes that cleave.
5th International Conference on Sustainable Development
ICOEST th International Conference on Environmental
BRC Science Highlight Identification of a secondary metabolite gene cluster in budding yeasts with important implications for biofuel production Objective.
by Jacob O. Brunkard, Anne M. Runkel, and Patricia C. Zambryski
by Kevin V. Solomon, Charles H. Haitjema, John K. Henske, Sean P
FOXO transcription factors
BRC Science Highlight Yeast evolved for enhanced xylose utilization reveal interactions between cell signaling and Fe-S cluster biogenesis Objective Obtain.
MAGs and testes transcript expression levels in the An. gambiae complex. MAGs and testes transcript expression levels in the An. gambiae complex. (A) Percentage.
Structural features of substrate specificity
Improving alkaline-oxidative pretreatment in hardwoods
Silencing the Transcriptome's Dark Matter: Mechanisms for Suppressing Translation of Intergenic Transcripts  Kellie S. Bickel, David R. Morris  Molecular.
Lipid-producing sorghum as a source of biodiesel
Anaerobic fungi contain a wealth of biomass-degrading machinery
BRC Science Highlight Lipid droplets engineered for the production of terpenoids in plant leaves Objective Increase production of terpenoid bioproducts.
4th International Conference on Engineering and Natural Science
BRC Science Highlight Survey of fungal genomes reveals functional adaptation of a set of borrowed bacterial genes Objective Survey a broad range of fungal.
Xylose fermentation by yeast requires rewired cellular signaling
Switchgrass Harvest Date Affects Xylose Utilization and Ethanol Yield
Presentation transcript:

Evolution of cellulolytic activity in Streptomyces BRC Science Highlight Evolution of cellulolytic activity in Streptomyces Objective To understand the processes driving the evolution of biomass deconstruction in the Streptomyces genus. Approach Compared the phylogenetic diversity of over 1,100 strains of Streptomyces and used a quantitative filter paper (FP) assay to measure the cellulose degrading activity of 223 diverse strains isolated from free-living and eukaryotic host-associated niches. 13% of the strains (29/223) deconstructed cellulose with activity comparable to Streptomyces sp. Sirex-AA from wood wasps, and 86% of the highly cellulolytic organisms grouped into 2 phylogenetically distinct clades associated with insects that feed on plant biomass (red lines, clades I and III – see Figure 1). Result/Impacts Plant biomass degrading enzymes (CAZy) are widespread in Streptomyces, but the ability to rapidly deconstruct cellulose is surprisingly rare in this genus (and enriched in strains associated with insect hosts that feed on plant biomass). Genomic, transcriptomic, and biochemical analyses identified key changes in gene content and transcriptional control of expression that confer highest cellulolytic activity. Genes from naturally evolved cellulolytic Streptomyces are a rich new resource for biotechnology research. Figure 1. Distribution of cellulolytic ability in the genus Streptomyces. Notes: text Title again: Text 1-2 sentence summary? Book AJ, Lewin GR, McDonald BR, Takasuka TE, Wendt-Pienkowski E, Doering DT, Suh S, Raffa KF, Fox BG, Currie CR “Evolution of High Cellulolytic Activity in Symbiotic Streptomyces through Selection of Expanded Gene Content and Coordinated Gene Expression”. PLOS Biology. 55 (12), 14(6): e1002475 (2016) [DOI: 10.1371/journal.pbio.1002475] GLBRC February 2017