Population Genetic Structure of Octopus vulgaris

Slides:



Advertisements
Similar presentations
Biogeography Chapter 11 History of Lineages and Biotas.
Advertisements

Molecular-genetic analysis of starfishes Asterias amurensis and A. rubens A.L. Drozdov, I.P. Vladychenskaya,, N.B. Petrov red seastar A. rubens, red seastar.
1 General Phylogenetics Points that will be covered in this presentation Tree TerminologyTree Terminology General Points About Phylogenetic TreesGeneral.
Summer Bioinformatics Workshop 2008 Comparative Genomics and Phylogenetics Chi-Cheng Lin, Ph.D., Professor Department of Computer Science Winona State.
Molecular Evolution Revised 29/12/06
Table 1. Statistics for short-beaked common dolphin mitochondrial DNA control region sequences. Genetic Analyses Reveal Multiple Populations Of Delphinus.
Neandertal mtDNA evidence: reported 1997 Dr. Svante Pääbo (Max Planck Institute for Evolutionary Anthropology). mtDNA sequence from type specimen of “neanderthalensis”
Dispersal models Continuous populations Isolation-by-distance Discrete populations Stepping-stone Island model.
Human Migrations Saeed Hassanpour Spring Introduction Population Genetics Co-evolution of genes with language and cultural. Human evolution: genetics,
Chapter 2 Opener How do we classify organisms?. Figure 2.1 Tracing the path of evolution to Homo sapiens from the universal ancestor of all life.
Materials and Methods Abstract Conclusions Introduction 1. Korber B, et al. Br Med Bull 2001; 58: Rambaut A, et al. Nat. Rev. Genet. 2004; 5:
Out-of-Africa Theory: The Origin Of Modern Humans
Genetic variation on mtDNA Cytb sequence of three populations of Chilean jack mackerel (Trachurus murphyi ) from the Southern Pacific Min ZHANG, Yong-jiu.
- Delphine MUTHS & Jérôme BOURJEA - Connectivity of Marine Protected Areas in South-Western Indian Ocean: Using population genetics of reef fish to contribute.
Origins of Host Specific Populations of Puccinia triticina Revealed by SNP Markers (Preliminary) M. Liu and J. A. Kolmer USDA-ARS Cereal Disease Laboratory,
Eurythoe complanata: more cryptic species in the Pacific? Mirandia Johnson, Elizabeth Borda and Anja Schulze Department of Marine Biology, Texas A&M University.
Phylogeography of the Seastar Linckia laevigata and its obligate parasite Thyca crystallina Bolanle Akinronbi, Marta Muñoz, Paul Barber.
Bioinformatics 2011 Molecular Evolution Revised 29/12/06.
Biology 101 DNA: elegant simplicity A molecule consisting of two strands that wrap around each other to form a “twisted ladder” shape, with the.
FISH SPECIES IDENTIFICATION AND BIODIVERSIFICATION IN ENUGU METROPOLIS RIVER BY DNA BACODING PRESENTED BY Chioma Nwakanma (PhD) Michael Okpara University.
Conservation Genetics of the Plains Topminnow, Fundulus sciadicus The plains topminnow (Fundulus sciadicus) is a freshwater killifish endemic to the Great.
PHYLOGEOGRAPHY OF THE BOBWHITES Damon Williford, Randy W. DeYoung, Leonard A. Brennan, Fidel Hernández Caesar Kleberg Wildlife Research Institute Texas.
Analysis of Mitochondrial DNA from Chimpanzees in Tanzania Timothy Comar, April Bednarski, and Douglas Green.
Figure 1. Map depicting the supposed evolutionary history of terrestrial leeches in North America. Shaded area represents the Appalachian Range. (●) Haemopis.
Species boundaries, phylogeography and conservation genetics of the red- legged frog (Rana aurora/drytonii) complex Presented by: Chris Burton & Matt Meyer.
Fábio Lang da Silveira – This talk on behalf of OBIS International Committee and OBIS North & South America Nodes USP – Zoology.
Randy W. DeYoung, Erin M. Wehland, Damon L
Phylogeography of Leucetta chagosensis (Porifera, Calcarea) Christoph Flucke, Jens Kurz, Rasmus Liedigk, Zdenka Valenzova Fig.4: RAxML Phylogram Fig.5:
Northern Star Coral (Astrangia poculata) Populations from the New Jersey Coast. Abstract- This project investigated the distribution and molecular evolution.
Female dispersal and gene flow Low High Male dispersal and gene flow Low High Geographic structure in… mtDNA-- yes Autosomal genes-- yes Y-linked genes--
Phylogeographic structure of Tridacna crocea across the Indo West Pacific “How diverse is your clam chowda?” Matthew Subia 1, Paul Barber 2 1 CSU Monterey.
 DNA was extracted from New England cottontail fecal pellets 1 using a QiAmp DNeasy Stool Kit (Qiagen) Genetic Structure of an Isolated New England Cottontail.
Measuring genetic divergence and diversity in Pennant’s red colobus monkey and Preuss’s red colobus monkey: Implications for the conservation of two endangered.
Gene flow and speciation. Mechanism for speciation Allopatric speciation Sympatric speciation.
related to Careproctus melanurus Gilbert 1892
Evolutionary history of gorillas inferred from complete mitochondrial DNA sequences Das R1, Hergenrother SD1, Lurie-Marino M1, Soto-Calderón ID2,3, Anthony.
Can you name all Seven Continents? What about the Oceans?
Mackenzie Damon, Nita George, Amy Tomko – *Sayville High School
Continents and Oceans.
Introduction Conclusion References Aim of the work
Cryptic Sucker Species of the Northeast
Biodiversity of dogfishes (genus SQUALUS) in the eastern Atlantic and Mediterranean Sea – a molecular perspective A. VERÍSSIMO, D. ZAERA-PEREZ, R. LESLIE,
S. orientale, S. inexspectatum and S. subsecundum
Figure 1. Map showing the sampling sites of Hexaplex trunculus
Sierra M. Love Stowell & Andrew P. Martin Student Figures
Physical Features of South America
Figure 1. Lineages circulating in sampled regions
Tracie M. Jenkins, Brian T. Forschler, Dan R. Suiter, Tyler D. Eaton
Figure 4. (A) Distribution of pairwise relatedness coefficients in a Mediterranean population of gilthead sea bream Sparus aurata from Southern France.
BIOGEOGRAPHIC ATLAS OF THE SOUTHERN OCEAN
Gene-sequence analysis reveals at least three species hidden in Zausodes arenicolus Erin Easton November 13, 2008.
5.4 Cladistics.
Rachel Bautzmann, Mentor: Dr
Haplotype Diversity in Immune Related Genes Between Different Geographical Regions and Populations Haplotype frequencies, by color, for each of the 52.
Metagenomics Microbial community DNA extraction
The Diversity Present in 5140 Human Mitochondrial Genomes
Volume 25, Issue 24, Pages (December 2015)
Volume 23, Issue 24, Pages (December 2013)
Track the Split of Crocodile Sub Populations
Multi-locus Analyses Reveal Four Giraffe Species Instead of One
Coupling Genetic and Ecological-Niche Models to Examine How Past Population Distributions Contribute to Divergence  L. Lacey Knowles, Bryan C. Carstens,
The Dual Origin of the Malagasy in Island Southeast Asia and East Africa: Evidence from Maternal and Paternal Lineages  Matthew E. Hurles, Bryan C. Sykes,
Maternal History of Oceania from Complete mtDNA Genomes: Contrasting Ancient Diversity with Recent Homogenization Due to the Austronesian Expansion  Ana T.
Molecular data assisted morphological analyses
Fig. 1. The geographic range of D
Advances in Understanding Bacterial Pathogenesis Gained from Whole-Genome Sequencing and Phylogenetics  Elizabeth Klemm, Gordon Dougan  Cell Host & Microbe 
Evidence for Sympatric Speciation by Host Shift in the Sea
Earth’s Hemispheres.
Evidence for Sympatric Speciation by Host Shift in the Sea
The continents.
Presentation transcript:

Population Genetic Structure of Octopus vulgaris 09/30/11 Population Genetic Structure of Octopus vulgaris Alexandre Jassoud*, Matthew Lucas, Tania Lado Insua**, Anastasia Miliou, Nikolaos Schizas *Department of Marine Sciences, University of Puerto Rico, Mayagüez, Mayagüez, PR 00681 **Department of Ocean Engineering. Bay Campus, University of Rhode Island. Narragansett, 02882, RI, USA. Octopus vulgaris, Cuvier, 1797 Introduction The common octopus O. vulgaris, is thought to have a cosmopolitan distribution and can be found worldwide between 50N and 50S (Figure 1). Despite the commercial importance of O. vulgaris, its distribution and genetic population structure are relatively unknown. Studies on the genetic population structure of O. vulgaris began with Söller et al. (2000), who concluded that the O. vulgaris from Caribbean are phylogenetically closer to O. bimaculoides than to O. vulgaris from Europe and that is a paraphyletic species. Oosthuizen et al. (2004) compared African and European populations to those in Taiwan and the Caribbean Sea. The study showed little divergence between Europe and Africa. Warnke et al. (2004) suggested that the distribution of O. vulgaris extends beyond the Mediterranean and the eastern Atlantic, including the western Atlantic and the northwestern Pacific. The objective of this study was to estimate the connectivity of O. vulgaris populations between Caribbean vs. European and African populations. Results A 467 bp portion of the mitochondrial gene COI was analysed from 92 specimens from Mediterranean, Eastern Atlantic, greater Caribbean area, Indian Ocean and Pacific Ocean (Figure 2). Seventeen haplotypes were identified, four of which originated in the Caribbean (Figure 3). Thirteen of the haplotypes were singletons. The highest values of haplotype diversity were observed in the Japanese and E. Atlantic specimens. Conclusions The most important finding was the significant population divergence we observed between western and Eastern Atlantic (including Mediterranean) populations, which were previously thought as panmictic. The Caribbean lineage represents a lineage of Octopus vulgaris that is more genetically distant to all other O. vulgaris populations but still less divergent between any O. vulgaris and the congeneric species O. briareus. The Caribbean O. vulgaris represents a distinct genetic lineage within the O. vulgaris species complex. Most likely the most southern distribution of the Caribbean lineage is North Brazil and the most northern limits of its distribution are the Carolinas. A new study with a higher number of samples is needed to decipher the population structure within Caribbean. Our data agrees with the assertion that the common octopus O. vulgaris is a complex of several closely related, rather indistinguishable species in tropical to temperate waters (Norman, 2003). Uncorrected average pairwise differences among populations indicated that the Caribbean is 11.6-11.7% divergent compared to Mediterranean, Atlantic and Japanese samples of O. vulgaris The sequence divergence between Japan and Mediterranean and E. Atlantic was 3.1%, indicating a close genetic relationship between these two regions. All O. vulgaris populations were at least 14.5% divergent from the closely related O. briareus. Figure 1. Distribution of O. vulgaris. Modified from http://world-map.nl Literature cited Söller, R., K. Warnke, U. Saint-Paul and D. Blohm. 2000. Sequence divergence of mitochondrial DNA indicates cryptic biodiversity in Octopus vulgaris and supports the taxonomic distinctiveness of Octopus mimus (Cephalopoda: Octopodidae). Marine Biology 136: 29-35. Norman, M. 2003. Cephalopods. A World Guide. ConchBooks, Hackenheim, Germany. . Oosthuizen, A., M. Jiwaji and P. Shaw. 2004. Genetic analysis of the Octopus vulgaris population on the coast of South Africa. South African Journal of Science 100: 603-607. Warnke, K., R. Söller, D. Blohm and U. Saint-Paul. 2004. A new look at geographic and phylogenetic relationships within the species group surrounding Octopus vulgaris (Mollusca, Cephalopoda): indications of very wide distribution from mitochondrial DNA sequences. Journal of Zoological Systematics and Evolutionary Research 42 306-312. The Japanese octopi formed a monophyletic clade which is more closely related to the octopi from those in Mediterranean, E. Atlantic, Tristan da Cunha and three specimens from St. Paul and Amsterdam Islands in the South Indian Ocean (Figures 2, 4). All specimens from the Mediterranean Sea (Spain, France and Greece) together with those from Senegal, Tristan da Cunha and some from South Africa formed a non-differentiated clade (Figure 4). Within that clade, all octopi from Atlantic Spain formed a tightly clustered clade. Two specimens from South Africa formed a sister clade of the Mediterranean/E. Atlantic clade (Figure 4 ). Materials and methods Specimens of Octopus vulgaris was collected by snorkeling, scuba diving, purchased from fishermen or downloaded from GenBank (Figure2). Total genomic DNA was extracted using a QIAGEN Dneasy kit, and was purified with the Exosap procedure. DNA trace files were verified in CodonCode Aligner. Aligned sequences were analyzed in DnaSP v5, Arlequin v3.5, jModelTest 3.06, PhyML, PAUP* 4.0b10 and MrBayes v. 3.2. Acknowledgments I would like to thank Paul Yoshioka and Richard Appeldoorn for their comments. I gratefully acknowledge the financial support of the Department of Marine Sciences and the Conchologists of America, Inc. In addition, I thank Hernan Torres, Pascal Mege, Marcos, Godo and Yajaira Sierra-Sastre. Archipelagos, Institute of Marine Conservation, provided tissue samples from Greece Figure 3. Parsimony network of 17 haplotypes of O. vulgaris based on COI. Each circle represents a unique haplotype. Each haplotype has a numerical identifier and the number of samples sharing a particular haplotype is indicated. The minimum inferred number of mutational steps is represented by the yellow dots. For further information Please contact alexandrejassoud@yahoo.fr. More information on this and related projects can be obtained at http://cima.uprm.edu/~n_schizas/ Figure 4. Maximum Likelihood genealogy of Octopus vulgaris based on COI. Figure 2. Origin of O. vulgaris analyzed in this study. The blue dots represent new locations. The orange dots represent locations of publicly available sequences. Modified from http://world-map.nl. . Table 1. Pair-wise ΦSTs based on Octopus vulgaris COI sequences. Tristan = Tristan da Cunha. Asterisks indicate significant differences (*P<0.05, **P<0.01, ***P<0.001).