Dynamic Causal Model for Steady State Responses

Slides:



Advertisements
Similar presentations
Dynamic Causal Modelling (DCM) for fMRI
Advertisements

Bayesian inference Lee Harrison York Neuroimaging Centre 01 / 05 / 2009.
Dynamic causal Modelling for evoked responses Stefan Kiebel Wellcome Trust Centre for Neuroimaging UCL.
Will Penny DCM for Time-Frequency DCM Course, Paris, DCM for Induced Responses 2. DCM for Phase Coupling.
DCM for ERP/ERF A presentation for Methods for Dummies By Ashwini Oswal and Elizabeth Mallia.
Bayesian models for fMRI data
Dynamic Causal Modelling for ERP/ERFs Valentina Doria Georg Kaegi Methods for Dummies 19/03/2008.
What do you need to know about DCM for ERPs/ERFs to be able to use it?
Computational and physiological models Part 2 Daniel Renz Computational Psychiatry Seminar: Computational Neuropharmacology 14 March, 2014.
Bernadette van Wijk DCM for Time-Frequency VU University Amsterdam, The Netherlands 1. DCM for Induced Responses 2. DCM for Phase Coupling.
J. Daunizeau Motivation, Brain and Behaviour group, ICM, Paris, France Wellcome Trust Centre for Neuroimaging, London, UK Dynamic Causal Modelling for.
Dynamic Causal Modelling THEORY SPM Course FIL, London October 2009 Hanneke den Ouden Donders Centre for Cognitive Neuroimaging Radboud University.
Rosalyn Moran Virginia Tech Carilion Research Institute Dynamic Causal Modelling for Cross Spectral Densities.
Rosalyn Moran Virginia Tech Carilion Research Institute Bradley Department of Electrical & Computer Engineering Department of Psychiatry and Behavioral.
Dynamic Causal Modelling (DCM) for fMRI
Basal Ganglia. Involved in the control of movement Dysfunction associated with Parkinson’s and Huntington’s disease Site of surgical procedures -- Deep.
Dynamic Causal Modelling (DCM): Theory Demis Hassabis & Hanneke den Ouden Thanks to Klaas Enno Stephan Functional Imaging Lab Wellcome Dept. of Imaging.
18 th February 2009 Stephanie Burnett Christian Lambert Methods for Dummies 2009 Dynamic Causal Modelling Part I: Theory.
DCM for ERPs/EFPs Clare Palmer & Elina Jacobs Expert: Dimitris Pinotsis.
Dynamic Causal Modelling for fMRI Justin Grace Marie-Hélène Boudrias Methods for Dummies 2010.
J. Daunizeau Wellcome Trust Centre for Neuroimaging, London, UK UZH – Foundations of Human Social Behaviour, Zurich, Switzerland Dynamic Causal Modelling:
Dynamic Causal Modelling Will Penny Wellcome Department of Imaging Neuroscience, University College London, UK FMRIB, Oxford, May
Dynamic Causal Modelling of Evoked Responses in EEG/MEG Wellcome Dept. of Imaging Neuroscience University College London Stefan Kiebel.
Dynamic causal modelling of electromagnetic responses Karl Friston - Wellcome Trust Centre for Neuroimaging, Institute of Neurology, UCL In recent years,
J. Daunizeau ICM, Paris, France ETH, Zurich, Switzerland Dynamic Causal Modelling of fMRI timeseries.
Input Single-state DCM Intrinsic (within- region) coupling Extrinsic (between- region) coupling Multi-state DCM with excitatory and inhibitory connections.
Abstract This talk will present a general approach (DCM) to the identification of dynamic input-state-output systems such as the network of equivalent.
Dynamic Causal Modelling for EEG and MEG
Abstract This tutorial is about the inversion of dynamic input-state-output systems. Identification of the systems parameters proceeds in a Bayesian framework.
Dynamic Causal Modelling (DCM) Marta I. Garrido Thanks to: Karl J. Friston, Klaas E. Stephan, Andre C. Marreiros, Stefan J. Kiebel,
Dynamic Causal Modelling Introduction SPM Course (fMRI), October 2015 Peter Zeidman Wellcome Trust Centre for Neuroimaging University College London.
Bernadette van Wijk DCM for Time-Frequency 1. DCM for Induced Responses 2. DCM for Phase Coupling.
Dynamic Causal Model for evoked responses in MEG/EEG Rosalyn Moran.
DCM: Advanced issues Klaas Enno Stephan Centre for the Study of Social & Neural Systems Institute for Empirical Research in Economics University of Zurich.
Bayesian inference Lee Harrison York Neuroimaging Centre 23 / 10 / 2009.
DCM for evoked responses Ryszard Auksztulewicz SPM for M/EEG course, 2015.
Principles of Dynamic Causal Modelling (DCM) Bernadette van Wijk Charité-University Medicine Berlin SPM course for MEG & EEG 2016.
DCM for ERP/ERF: theory and practice Melanie Boly Based on slides from Chris Phillips, Klaas Stephan and Stefan Kiebel.
Dynamic Causal Modelling for event-related responses
Principles of Dynamic Causal Modelling
5th March 2008 Andreina Mendez Stephanie Burnett
Dynamic Causal Modeling of Endogenous Fluctuations
DCM for ERP/ERF: theory and practice
Effective Connectivity: Basics
Effective Connectivity
Neural Oscillations Continued
Dynamic Causal Modelling (DCM): Theory
DCM for Time Frequency Will Penny
Wellcome Trust Centre for Neuroimaging University College London
Dynamic Causal Model for evoked responses in M/EEG Rosalyn Moran.
? Dynamical properties of simulated MEG/EEG using a neural mass model
Dynamic Causal Model for Steady State Responses
DCM: Advanced issues Klaas Enno Stephan Laboratory for Social & Neural Systems Research Institute for Empirical Research in Economics University of.
Brain Connectivity and Model Comparison
DCM for evoked responses
DCM for Time-Frequency
Dynamic Causal Modelling
SPM2: Modelling and Inference
Dynamic Causal Modelling for M/EEG
Dynamic Causal Modelling
CRIS Workshop: Computational Neuroscience and Bayesian Modelling
Effective Connectivity
M/EEG Statistical Analysis & Source Localization
Wellcome Centre for Neuroimaging at UCL
Bayesian Inference in SPM2
Wellcome Trust Centre for Neuroimaging, University College London, UK
Dynamic Causal Modelling for evoked responses
DCM Demo – Model Specification, Inversion and 2nd Level Inference
The canonical microcircuit.
Presentation transcript:

Dynamic Causal Model for Steady State Responses Rosalyn Moran Wellcome Trust Centre for Neuroimaging

DCM for Steady State Responses A dynamic causal model (DCM) of steady-state responses in electrophysiological data is summarised in terms of their cross-spectral density. Where These spectral data-features are generated by a biologically plausible, neural-mass model of coupled electromagnetic sources; where each source comprises three sub-populations. Under linearity and stationarity assumptions, the model’s biophysical parameters (e.g., post-synaptic receptor density and time constants) prescribe the cross-spectral density of responses measured directly (e.g., local field potentials) or indirectly through some lead-field (e.g., electroencephalographic and magnetoencephalographic data). Inversion of the ensuing DCM provides conditional probabilities on the synaptic parameters of intrinsic and extrinsic connections in the underlying neuronal network

Overview Data Features The Generative Model in DCMs for Steady-State Responses - neural mass model Bayesian Inversion: Parameter Estimates and Model Comparison Example. DCM for Steady State Responses: Glutamate with Microdialysis validation Predicting Anaesthetic Depth

Overview Data Features The Generative Model in DCMs for Steady-State Responses - neural mass model Bayesian Inversion: Parameter Estimates and Model Comparison Example. DCM for Steady State Responses: Glutamate with Microdialysis validation Predicting Anaesthetic Depth

Steady State Statistically: A “Wide Sense Stationary” signal has 1st and 2nd moments that do not vary with respect to time Dynamically: A system in steady state has settled to some equilibrium after a transient Data Feature: Quasi-stationary signals that underlie: Spectral Densities in the Frequency Domain

Steady State Power (uV2) Source 2 Frequency (Hz) Source 1 Power (uV2) 30 25 Power (uV2) Source 2 20 15 10 5 5 10 15 20 25 30 Frequency (Hz) 5 10 15 20 25 30 Source 1 Power (uV2) Frequency (Hz)

Cross Spectral Density 1 EEG - MEG – LFP Time Series 2 Cross Spectral Density 3 1 2 4 3 1 2 3 4 4

Cross Spectral Density Vector Auto-regression a p-order model: Linear prediction formulas that attempt to predict an output y[n] of a system based on the previous outputs Resulting in a matrices for c Channels Cross Spectral Density for channels i,j at frequencies

Overview Data Features The Generative Model in DCMs for Steady-State Responses - neural mass model Bayesian Inversion: Parameter Estimates and Model Comparison Example. DCM for Steady State Responses: Glutamate with Microdialysis validation Predicting Anaesthetic Depth

DCM fMRI ERPs Neural state equation: inputs Hemodynamic forward model: neural activityBOLD (nonlinear) Electric/magnetic forward model: neural activityEEG MEG LFP (linear) Neural state equation: fMRI ERPs Neural model: 1 state variable per region bilinear state equation no propagation delays Neural model: 8 state variables per region nonlinear state equation propagation delays inputs

DCM for SSRs Electric/magnetic forward model: neural activityEEG MEG LFP (linear) Hemodynamic forward model: neural activityBOLD (nonlinear) Electric/magnetic forward model: neural activityEEG MEG LFP (linear) Neural state equation: SSRs fMRI ERPs Neural model: 8-10 state variables per region propagation delays linearised model modulation transfer function Neural model: 1 state variable per region bilinear state equation no propagation delays Neural model: 8 state variables per region nonlinear state equation propagation delays inputs

Neural Mass Model State equations neuronal (source) model The state of a neuron comprises a number of attributes, membrane potentials, conductances etc. Modelling these states can become intractable. Mean field approximations summarise the states in terms of their ensemble density. Neural mass models consider only point densities and describe the interaction of the means in the ensemble MEG/EEG/LFP signal Extrinsic Connections Intrinsic Connections spiny stellate cells inhibitory interneurons pyramidal cells neuronal (source) model Internal Parameters State equations

inhibitory interneurons Neural Mass Model A F,L,B inhibitory interneurons 1. Synaptic Input Sigmoid Response Function spiny stellate cells Firing Rate pyramidal cells 2. Synaptic Impulse Response Function Membrane Potential v Amplitude (E/IPSP) Time msec (E/IPSP)

Neural Mass Model u u ) , ( u x f = & g g g g g g g g g g g g g g g g Lateral connections inputs Intrinsic connections Inhibitory cells in supragranular layers Inhibitory cells in supragranular layers g g g g 11 8 12 10 2 5 7 9 3 ) ( x S H I B i e - = + & k g 5 5 5 5 Backward connections g g g g g g g g 4 4 4 4 3 3 3 3 Excitatory spiny cells in granular layers Excitatory spiny cells in granular layers constant input ) , ( u x f = & 1 2 4 9 ) ( (( x Cu S I F H e k g - + = & x x & & = = x x 1 1 4 4 u u x x & & = = k k H H ( ( g g s s ( ( x x - - a a ) ) + + u u ) ) - - 2 2 k k x x - - k k 2 2 x x 4 4 e e e e 1 1 9 9 e e 4 4 e e 1 1 g g g g g g g g 1 1 1 1 2 2 2 2 Excitatory pyramidal cells in infragranular layers Excitatory pyramidal cells in infragranular layers 6 5 9 3 2 12 4 1 ) ( )) x S H BS i e - = + & k g m Forward connections output

ERP or Steady State Responses + Freq Domain Output ERP Output Outputs Through Lead field c1 c2 c3 Time Domain neuronal states output s2(t) Time Domain Freq Domain output s3(t) output s1(t) Pulse Input Freq Domain Cortical Input driving input u(t)

Frequency Domain Generative Model (Perturbations about a fixed point) Time Differential Equations State Space Characterisation Transfer Function Frequency Domain Linearise mV

Cross Spectral Density Transfer Function and Convolution Kernels First Order Volterra Series Expansion: Exact Linear Impulse Response output s2(t) output s3(t) output s1(t) u1 By Definition, the Cross Spectral Density is given by

Overview Data Features The Generative Model in DCMs for Steady-State Responses - a family of neural mass model Bayesian Inversion: Parameter Estimates and Model Comparison Example. DCM for Steady State Responses: Glutamate with Microdialysis validation Predicting Anaesthetic Depth

Bayesian Inversion + Output c3 c1 c2 Time Domain Freq Domain NMM Frequency (Hz) Power Time Domain Freq Domain c3 c1 NMM Output Cortical Input c2 + Model Evidence Approximate Posterior

Define likelihood model Inversion Neural Parameters Define likelihood model Observer function Specify priors Inference on models Invert model Inference on parameters Make inferences

Overview Data Features The Generative Model in DCMs for Steady-State Responses - a family of neural mass model Bayesian Inversion: Parameter Estimates and Model Comparison Example. DCM for Steady State Responses: Glutamate with Microdialysis validation Predicting Anaesthetic Depth

Glutamate & microdialysis Schizophrenic: Rearing Models Controls Controls mPFC mPFC N=7 Isolated Isolated mPFC N=8 mPFC Regular Glutamate Regular Glutamate Low Glutamate Low Glutamate mPFC EEG 0.12 0.12 0.06 0.06 mV mV - - 0.06 0.06 mPFC

Hypotheses Main findings from microdialysis: reduction in prefrontal glutamate levels of isolated group → sensitization of post-synaptic mechanisms (e.g. upregulation) Model parameters should reflect amplitude of synaptic kernels coupling parameters of glutamatergic connections neuronal adaptation (i.e., 2) because: amplitude of EPSP → activation of voltage-sensitive Ca2+ channels → intracellular Ca2+ → Ca-dependent K+ currents → IAHP → adaptation

Results u u g g g g g g g [3.8,6.3] [4.6,3.9] [0.76,1.34] [29,37] sensitization of post-synaptic mechanisms Intrinsic Intrinsic 5 g 5 g connections Inhibitory cells in supragranular layers [3.8,6.3] (0.04) 4 g 3 g [29,37] (0.4) [4.6,3.9] 4 g (0.17) Extrinsic Extrinsic forward forward Excitatory spiny cells in granular layers Excitatory spiny cells in granular layers connections connections u u 1 g 2 g [195, 233] [161, 210] (0. 13) (0.37) Excitatory pyramidal cells in infragranular layers Excitatory pyramidal cells in infragranular layers Control group estimates in blue Isolated animals in red with p values in parentheses. [0.76,1.34] (0.0003) Increased neuronal adaption: decrease firing rate In our simulation excitatory parameters were inferred with inhibitory connectivity (and impulse response) prior parameter variances set to zero. Two-tailed paired t-test Moran et al., NeuroImage, 2007

Model Fits

Overview Data Features The Generative Model in DCMs for Steady-State Responses - a family of neural mass model Bayesian Inversion: Parameter Estimates and Model Comparison Example. DCM for Steady State Responses: Glutamate with Microdialysis validation Predicting Anaesthetic Depth

Case Study: Depth of Anaesthesia LFP 0.12 0.12 Trials: 1: 1.4 Mg Isoflourane 2: 1.8 Mg Isoflourane 3: 2.4 Mg Isoflourane 4: 2.8 Mg Isoflourane (1 per condition) 0.06 0.06 mV mV - - 0.06 0.06 30sec 0.12 0.12 0.06 0.06 mV mV - - 0.06 0.06

Models FB Model (1) A1 Forward (Excitatory Connection) A2 F Model (2) Backward (Inhibitory Connection) F Model (2) A1 Forward (Excitatory Connection) Forward (Excitatory Connection) A2 L Model (3) Lateral (Mixed Connection) A1 A2 Lateral (Mixed Connection)

Results FB Model (1) A1 Forward A2 Backward 1 2 3 4 20 40 60 80 100 20 40 60 80 100 A1 to A2: Excitatory trial strength (%) Results FB Model (1) A1 A2 Forward Backward 1 2 3 4 50 100 150 200 250 300 A2 to A1: Modulatory trial strength (%)

Pathological Beta Rhythms in Parkinson’s Chronic loss Dopamine innervations in the Striatum Traditional theory of negative motor symptoms induced by an unbalance in the striatal outputs of direct ( ) /indirect ( ) pathways Newer theory focused on pathological synchrony: STN Beta oscillations correlate to disease state 20 Hz

Pathological Beta Rhythms D Neuronal states: LFP model subsets STN Str GPe Ctx GPi Th GABA Glut

Pathological Beta Rhythms Ctx Str Effects of Chronic Dopamine Loss GPe STN GPi Th Control PD 0.9 1.6 0.8 1.4 0.7 1.2 0.6 1 0.5 0.8 0.4 0.6 0.3 0.2 0.4 0.1 0.2 GPe to STN Str to GPe

Summary DCM is a generic framework for asking mechanistic questions of neuroimaging data Neural mass models parameterise intrinsic and extrinsic ensemble connections and synaptic measures DCM for SSR is a compact characterisation of multi- channel LFP or EEG data in the Frequency Domain Bayesian inversion provides parameter estimates and allows model comparison for competing hypothesised architectures Empirical results suggest valid physiological predictions