Diffusion over potential barriers with colored noise

Slides:



Advertisements
Similar presentations
Lecture 13: Conformational Sampling: MC and MD Dr. Ronald M. Levy Contributions from Mike Andrec and Daniel Weinstock Statistical Thermodynamics.
Advertisements

The Plasma Effect on the Rate of Nuclear Reactions The connection with relaxation processes, Diffusion, scattering etc.
Time-dependent picture for trapping of an anomalous massive system into a metastable well Jing-Dong Bao Department of Physics, Beijing.
Incorporating Solvent Effects Into Molecular Dynamics: Potentials of Mean Force (PMF) and Stochastic Dynamics Eva ZurekSection 6.8 of M.M.
Optical Tweezers F scatt F grad 1. Velocity autocorrelation function from the Langevin model kinetic property property of equilibrium fluctuations For.
Markov processes in a problem of the Caspian sea level forecasting Mikhail V. Bolgov Water Problem Institute of Russian Academy of Sciences.
1 Chapter 40 Quantum Mechanics April 6,8 Wave functions and Schrödinger equation 40.1 Wave functions and the one-dimensional Schrödinger equation Quantum.
Outline Formulation of Filtering Problem General Conditions for Filtering Equation Filtering Model for Reflecting Diffusions Wong-Zakai Approximation.
Granular flows under the shear Hisao Hayakawa* & Kuniyasu Saitoh Dept. Phys. Kyoto Univ., JAPAN *
Group problem solutions 1.(a) (b). 2. In order to be reversible we need or equivalently Now divide by h and let h go to Assuming (as in Holgate,
Fluctuations and Brownian Motion 2  fluorescent spheres in water (left) and DNA solution (right) (Movie Courtesy Professor Eric Weeks, Emory University:
Viscosity. Average Speed The Maxwell-Boltzmann distribution is a function of the particle speed. The average speed follows from integration.  Spherical.
Physics of fusion power
Motion of a mass at the end of a spring Differential equation for simple harmonic oscillation Amplitude, period, frequency and angular frequency Energetics.
Statistical Mechanics of Proteins
Kramers Problem in anomalous dynamics Sliusarenko O.Yu. Akhiezer Institute for Theoretical Physics NSC KIPT, Kharkiv, Ukraine.
2. Lecture SS 2006 GK Advanced rate theory Reviews in Modern Physics 62, (1990)
A subordination approach to modelling of subdiffusion in space-time-dependent force fields Aleksander Weron Marcin Magdziarz Hugo Steinhaus Center Wrocław.
Optical tweezers and trap stiffness
Q13.1 An object on the end of a spring is oscillating in simple harmonic motion. If the amplitude of oscillation is doubled, 1. the oscillation period.
1 CHAPTER 6 HEAT TRANSFER IN CHANNEL FLOW 6.1 Introduction (1) Laminar vs. turbulent flow transition Reynolds number is where  D tube diameter  u mean.
Experimental results on the fluctuations in two out of equilibrium systems S. Joubaud, P.Jop, A. Petrossyan and S.C. Laboratoire de Physique, ENS de Lyon,
Part I Convergence Results Andrew Stuart John Terry Paul Tupper R.K
1 IEE5668 Noise and Fluctuations Prof. Ming-Jer Chen Dept. Electronics Engineering National Chiao-Tung University 03/11/2015 Lecture 3: Mathematics and.
Dissipative Particle Dynamics. Molecular Dynamics, why slow? MD solves Newton’s equations of motion for atoms/molecules: Why MD is slow?
Elements of Stochastic Processes Lecture II
Study on synchronization of coupled oscillators using the Fokker-Planck equation H.Sakaguchi Kyushu University, Japan Fokker-Planck equation: important.
The Problem of Constructing Phenomenological Equations for Subsystem Interacting with non-Gaussian Thermal Bath Alexander Dubkov Nizhniy Novgorod State.
2. Brownian Motion 1.Historical Background 2.Characteristic Scales Of Brownian Motion 3.Random Walk 4.Brownian Motion, Random Force And Friction: The Langevin.
ECE-7000: Nonlinear Dynamical Systems Overfitting and model costs Overfitting  The more free parameters a model has, the better it can be adapted.
Nucleon DIffusion in Heavy-Ion Collisions
Transport in potentials random in space and time: From Anderson localization to super-ballistic motion Yevgeny Krivolapov, Michael Wilkinson, SF Liad Levy,
Lecture 6: Langevin equations
Vibrations and Waves Hooke’s Law Elastic Potential Energy Simple Harmonic Motion.
Fokker-Planck Equation and its Related Topics
Lecture 3. Full statistical description of the system of N particles is given by the many particle distribution function: in the phase space of 6N dimensions.
Simple Harmonic Motion Physics is phun!. a) 2.65 rad/s b) m/s 1. a) What is the angular velocity of a Simple Harmonic Oscillator with a period of.
ECE-7000: Nonlinear Dynamical Systems 2. Linear tools and general considerations 2.1 Stationarity and sampling - In principle, the more a scientific measurement.
Random Processes Gaussian and Gauss-Markov processes Power spectrum of random processes and white processes.
V.M. Sliusar, V.I. Zhdanov Astronomical Observatory, Taras Shevchenko National University of Kyiv Observatorna str., 3, Kiev Ukraine
CHAPTER 2.3 PROBABILITY DISTRIBUTIONS. 2.3 GAUSSIAN OR NORMAL ERROR DISTRIBUTION  The Gaussian distribution is an approximation to the binomial distribution.
ESTIMATION METHODS We know how to calculate confidence intervals for estimates of  and  2 Now, we need procedures to calculate  and  2, themselves.
Thermal explosion of particles with internal heat generation in turbulent temperature of surrounding fluid Igor Derevich, Vladimir Mordkovich, Daria Galdina.
Chapter 6 Random Processes
Numerical Solutions to the Diffusion Equation
ESTIMATION METHODS We know how to calculate confidence intervals for estimates of  and 2 Now, we need procedures to calculate  and 2 , themselves.
PHY Statistical Mechanics 12:00* - 1:45 PM TR Olin 107
Chapter 40 Quantum Mechanics
CHAPTER III LAPLACE TRANSFORM
水分子不時受撞,跳格子(c.p. 車行) 投骰子 (最穩定) 股票 (價格是不穏定,但報酬過程略穩定) 地震的次數 (不穩定)
PHY Statistical Mechanics 12:00* - 1:45 PM TR Olin 107
CORPORATE INSTITUTE OF SCIENCE & TECHNOLOGY , BHOPAL DEPARTMENT OF ELECTRONICS & COMMUNICATIONS MOSFET NOISE MODELS - Prof . Rakesh K . JHA.
František Šanda1, Shaul Mukamel2 1 Charles University, Prague
Outline Introduction Signal, random variable, random process and spectra Analog modulation Analog to digital conversion Digital transmission through baseband.
Noise Sources in Semiconductor Detectors
3 General forced response
Chapter 40 Quantum Mechanics
Energy dissipation and FDR violation
Statistical Data Analysis: II
Biointelligence Laboratory, Seoul National University
copyright Robert J. Marks II
Time-dependent picture for trapping of an anomalous massive system
Chapter 6 Random Processes
Brownian gyrator : A Minimal heat engine on the nanoscale
Accelerator Physics Statistical Effects
Chapter 40 Quantum Mechanics
Accelerator Physics G. A. Krafft, A. Bogacz, and H. Sayed
Basic descriptions of physical data
Normal Distribution Objectives: (Chapter 7, DeCoursey)
Accelerator Physics G. A. Krafft, A. Bogacz, and H. Sayed
Presentation transcript:

Diffusion over potential barriers with colored noise

Table of contents One dimensional Langevin-equation Generating colored noise Diffusion over potential barriers Inverse harmonic potential Mexican-hat potential Conclusion and outlook

One dimensional Langevin equation in the early 20th century Paul Langevin established a phenomenological equation to describe the Brownian motion : friction coefficient : external force : stochastic force Markovian description

Microscopical description- generalized Langevin equation dissipation fluctuation theorem: friction is directly related to the stochastic force autocorrelation leads to different correlation effects in general a Non-Markovian description

Generating colored noise : correlation function :random Gaussian variable :arbitrary pulse shape :mean pulse rate

Diffusion over potential barriers study on the impact of different potentials and correlation functions to the particle evolution correlation functions: D: diffusion coefficient typical time scales of the correlation

Diffusion over potential barriers potentials: inverse harmonic potential symmetric Mexican hat potential observables: average path transition probability fluxes positive and negative

Analytical solution system of differential equations: 1) Markovian case: 2) Non-Markovian case: solution method: i) Laplace transform of systems 1) & 2) ii) solving Laplace transform for X(s) iii) back transform X(s) to receive x(t) iv) determine and v) insert solutions of step iv) into equation of transition probability vi) time derivative of P(t) for total flux

Markovian case: average path: standard deviation:

transition probability:

transition probability converges to finite value for white noise: colored noise:

probability of 50% to cross the potential barrier, if argument of P(t) equals to 0 effective reduction of friction for finite correlation times

Inverse harmonic potential three cases for particle evolution K<Beff:thermal diffusion K=Beff : combination of thermal diffusion and kinetic energy of the particle K>Beff: kinetic energy of particles greater than thermal diffusion choice of parameters: m=1, T=0.25, D=1.5, x0=-1, =1

Kinetic energy K=0 particles propagate faster in case of colored noise transition probability average path particles propagate faster in case of colored noise ensemble is closer to the potential barrier for white noise total flux

Kinetic energy K=Beff/2 average path Transition probability realizations propagate towards the barrier Smaller correlation effect for increasing correlation times total flux

Kinetic energy K=Beff average path transition probability Average path fluctuates around the maximum of the barrier for small correlation time total flux

Kinetic energy K=2Beff comparable transition probability average path transition probability comparable transition probability average path crosses the potential barrier total flux

Comparison to numerics: K=Beff/2 Average path Transition probability total flux

Mexican hat potential initial distribution standard Gaussian distributed velocity choice of parameters: m=1, T=1.5, x0=-1, D=4 only for the first two correlation functions

Mexican hat potential- positive and negative flux

Transition probability

Average path

Conclusion and outlook autocorrelation leads to different effects: reduced effective friction memory effect smaller amplitude for positive and negative flux in case of Mexican-hat potential equilibration time rises for increasing correlation times studies of the Mexican-hat potential can be extended to Kramers' escape rate problem

Backup Autocorrelation leads to different correlation effects In general a non-Markovian description It can be obtained by a simple model: Infinitely extended system of harmonic oscillators with masses m Brownian particles of mass M>>m moved by collisions with the oscillators

Generating colored noise General noise function Pulse shape for white noise: : random Gaussian variable : arbitrary pulse shape : diffusion coefficient : mean pulse rate

Characteristic functional of a Gaussian process: Correlation function of a Gaussian process: Stationary process:

After Wiener-Khinchin theorem spectral density of stationary process is given by Fourier transform of correlations function

White noise

Colored noise

Comparison of analytical with numerical solution- K=0 Average path Transition probability total current

Kinetic energy K=Beff Average Transition path probability total current

Kinetic energy K=2Beff Transition Average path probability total current