All genes with pathway annotation (23885)

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All genes with pathway annotation (23885) Supplementary 6：Pathway annotation of all-unigenes # Pathway All genes with pathway annotation (23885) Pathway ID 1 Metabolic pathways 5177 (21.67%) ko01100 2 Biosynthesis of secondary metabolites 2443 (10.23%) ko01110 3 Plant-pathogen interaction 1568 (6.56%) ko04626 4 Plant hormone signal transduction 1506 (6.31%) ko04075 5 Spliceosome 859 (3.6%) ko03040 6 RNA transport 839 (3.51%) ko03013 7 Endocytosis 656 (2.75%) ko04144 8 Protein processing in endoplasmic reticulum ko04141 9 Starch and sucrose metabolism 629 (2.63%) ko00500 10 Ribosome 621 (2.6%) ko03010 11 Glycerophospholipid metabolism 600 (2.51%) ko00564 12 Purine metabolism 565 (2.37%) ko00230 13 Pyrimidine metabolism 551 (2.31%) ko00240 14 Ubiquitin mediated proteolysis 487 (2.04%) ko04120 15 mRNA surveillance pathway 485 (2.03%) ko03015 16 Ether lipid metabolism 453 (1.9%) ko00565 17 RNA degradation 415 (1.74%) ko03018 18 Phenylpropanoid biosynthesis 374 (1.57%) ko00940 19 Ribosome biogenesis in eukaryotes 340 (1.42%) ko03008 20 RNA polymerase 306 (1.28%) ko03020 21 ABC transporters 305 (1.28%) ko02010 22 Amino sugar and nucleotide sugar metabolism 297 (1.24%) ko00520 23 Oxidative phosphorylation 273 (1.14%) ko00190 24 Circadian rhythm - plant 272 (1.14%) ko04712

25 Pentose and glucuronate interconversions 271 (1.13%) ko00040 26 Phagosome 249 (1.04%) ko04145 27 Glycolysis / Gluconeogenesis 242 (1.01%) ko00010 28 Phenylalanine metabolism 218 (0.91%) ko00360 29 Flavonoid biosynthesis 198 (0.83%) ko00941 30 Phosphatidylinositol signaling system ko04070 31 Arginine and proline metabolism 188 (0.79%) ko00330 32 Pyruvate metabolism ko00620 33 Nucleotide excision repair 187 (0.78%) ko03420 34 Cysteine and methionine metabolism 183 (0.77%) ko00270 35 Stilbenoid, diarylheptanoid and gingerol biosynthesis 181 (0.76%) ko00945 36 Peroxisome 177 (0.74%) ko04146 37 Regulation of autophagy 173 (0.72%) ko04140 38 Inositol phosphate metabolism 170 (0.71%) ko00562 39 Galactose metabolism 161 (0.67%) ko00052 40 Glutathione metabolism 160 (0.67%) ko00480 41 Carbon fixation in photosynthetic organisms 156 (0.65%) ko00710 42 Carotenoid biosynthesis 153 (0.64%) ko00906 43 Terpenoid backbone biosynthesis 152 (0.64%) ko00900 44 Ascorbate and aldarate metabolism 149 (0.62%) ko00053 45 Cyanoamino acid metabolism 147 (0.62%) ko00460 46 Basal transcription factors 146 (0.61%) ko03022 47 Homologous recombination 144 (0.6%) ko03440 48 Zeatin biosynthesis 143 (0.6%) ko00908 49 Glycerolipid metabolism 141 (0.59%) ko00561 50 Alanine, aspartate and glutamate metabolism 138 (0.58%) ko00250

51 Limonene and pinene degradation 137 (0.57%) ko00903 52 Glycine, serine and threonine metabolism ko00260 53 Fructose and mannose metabolism 134 (0.56%) ko00051 54 Porphyrin and chlorophyll metabolism 130 (0.54%) ko00860 55 Other glycan degradation ko00511 56 Nitrogen metabolism 128 (0.54%) ko00910 57 DNA replication ko03030 58 Tyrosine metabolism 127 (0.53%) ko00350 59 Natural killer cell mediated cytotoxicity 126 (0.53%) ko04650 60 Glycosylphosphatidylinositol(GPI)-anchor biosynthesis 124 (0.52%) ko00563 61 Glyoxylate and dicarboxylate metabolism ko00630 62 Base excision repair 121 (0.51%) ko03410 63 Phenylalanine, tyrosine and tryptophan biosynthesis 116 (0.49%) ko00400 64 alpha-Linolenic acid metabolism 115 (0.48%) ko00592 65 Photosynthesis ko00195 66 Pentose phosphate pathway 113 (0.47%) ko00030 67 Proteasome ko03050 68 Ubiquinone and other terpenoid-quinone biosynthesis 111 (0.46%) ko00130 69 Aminoacyl-tRNA biosynthesis 110 (0.46%) ko00970 70 Mismatch repair 107 (0.45%) ko03430 71 Citrate cycle (TCA cycle) 105 (0.44%) ko00020 72 Fatty acid metabolism 103 (0.43%) ko00071 73 SNARE interactions in vesicular transport 101 (0.42%) ko04130 74 Propanoate metabolism 100 (0.42%) ko00640 75 Protein export 99 (0.41%) ko03060

76 Flavone and flavonol biosynthesis 98 (0.41%) ko00944 77 Steroid biosynthesis ko00100 78 N-Glycan biosynthesis 96 (0.4%) ko00510 79 Sphingolipid metabolism 90 (0.38%) ko00600 80 Valine, leucine and isoleucine degradation 87 (0.36%) ko00280 81 beta-Alanine metabolism 85 (0.36%) ko00410 82 Cutin, suberine and wax biosynthesis 84 (0.35%) ko00073 83 Diterpenoid biosynthesis 82 (0.34%) ko00904 84 Fatty acid biosynthesis 78 (0.33%) ko00061 85 Biosynthesis of unsaturated fatty acids ko01040 86 Tryptophan metabolism 74 (0.31%) ko00380 87 Tropane, piperidine and pyridine alkaloid biosynthesis 69 (0.29%) ko00960 88 Glycosaminoglycan degradation ko00531 89 Lysine degradation 66 (0.28%) ko00310 90 Isoquinoline alkaloid biosynthesis 65 (0.27%) ko00950 91 Sulfur metabolism 59 (0.25%) ko00920 92 Folate biosynthesis 57 (0.24%) ko00790 93 Isoflavonoid biosynthesis 56 (0.23%) ko00943 94 Brassinosteroid biosynthesis 55 (0.23%) ko00905 95 Pantothenate and CoA biosynthesis 53 (0.22%) ko00770 96 Butanoate metabolism 51 (0.21%) ko00650 97 Riboflavin metabolism ko00740 98 One carbon pool by folate 48 (0.2%) ko00670 99 Fatty acid elongation 46 (0.19%) ko00062 100 Selenocompound metabolism 45 (0.19%) ko00450

101 Sesquiterpenoid and triterpenoid biosynthesis 45 (0.19%) ko00909 102 Histidine metabolism ko00340 103 Benzoxazinoid biosynthesis ko00402 104 Non-homologous end-joining ko03450 105 Nicotinate and nicotinamide metabolism 44 (0.18%) ko00760 106 Circadian rhythm - mammal 43 (0.18%) ko04710 107 Arachidonic acid metabolism 36 (0.15%) ko00590 108 Other types of O-glycan biosynthesis ko00514 109 Valine, leucine and isoleucine biosynthesis ko00290 110 Glycosphingolipid biosynthesis - ganglio series 33 (0.14%) ko00604 111 Linoleic acid metabolism 31 (0.13%) ko00591 112 Lysine biosynthesis ko00300 113 Glucosinolate biosynthesis 30 (0.13%) ko00966 114 Photosynthesis - antenna proteins 29 (0.12%) ko00196 115 Taurine and hypotaurine metabolism 26 (0.11%) ko00430 116 Thiamine metabolism ko00730 117 Vitamin B6 metabolism 23 (0.1%) ko00750 118 Sulfur relay system 22 (0.09%) ko04122 119 Anthocyanin biosynthesis 19 (0.08%) ko00942 120 Glycosphingolipid biosynthesis - globo series 18 (0.08%) ko00603 121 Indole alkaloid biosynthesis 17 (0.07%) ko00901 122 Synthesis and degradation of ketone bodies 12 (0.05%) ko00072 123 Biotin metabolism 10 (0.04%) ko00780 124 Betalain biosynthesis 9 (0.04%) ko00965 125 Lipoic acid metabolism 8 (0.03%) ko00785 126 Monoterpenoid biosynthesis ko00902 127 C5-Branched dibasic acid metabolism 7 (0.03%) ko00660 128 Caffeine metabolism 2 (0.01%) ko00232