15th Software Framework Meeting 14th of June 2017

Note Skype for Business session is being recorded For making minutes Recording can be made available if desired Skype for Business users Please mute microphone as much as possible (either your device or via the Skype interface) Do not enable video (maybe during discussion) Use “chat” facility for short communications (e.g. to note about problems with sound, etc)

15th Software Meeting Agenda Welcome Kris 10:30 Progress since last meeting 10:35 Git tutorial Casper 10:45 Progress on TOF reconstruction with STIR Nikos 11:00 Data transfer and file format conversion Ben 11:15 Head motion correction for PET/MR Alaleh 11:30 Road to Release 1.0 11:45 CCP PETMR awards for contributors 12:20 Future Meetings and A.O.B. 12:25 End 12:30

Progress since last meeting SIRF: Clean-up of PET AcquisitionModel.set_normalisation etc Improvement/addition of show* functions Clean-up/addition of “interactive” demos User’s Guide added to SIRF SuperBuild: Create env_ccppetmr.sh/.csh for easy installation Fixes in finding our packages (but still work to do) VM: update_VM.sh can start from empty VM update_VGA.sh to install/update VirtualBox Guest Additions Updated documentation Create new clean VM (Ubuntu 16.04)

More progress since last meeting Major improvements in documentation Wikis User’s Guide (now in MarkDown) Identification of some Issues for 0.9.1 Release of v0.9.0!

Road to Release 1.0 Target dates Task overview 1.0 Release Candidate (Target: end September) 1.0 Release (Target: mid October) Task overview Task_1.0 Word Online doc https://github.com/CCPPETMR/SIRF-SuperBuild/milestones https://github.com/CCPPETMR/SIRF/milestones https://github.com/CCPPETMR/CCPPETMR_VM/milestones

Release 1.0 items for discussion SuperBuild/VM versioning Distribution of software: VM, how to provide an Ubuntu ISO image Review of tasks and priority list

CCP PETMR Awards for Contributors What? Yearly (?) prizes to most active contributors Limited to Early Career Researchers and non-STFC Decided by CCP PETMR Executive Committee (Andrew, Claudia, David, Evgueni, Julian, Kris) Prizes Gold: £400 Silver: £200 Bronze: £100

CCP PETMR Awards for Contributors 2017 Bronze Casper da Costa-Luis For git magic, git and github education, and sound advice Silver Benjamin Thomas For the SuperBuild and CMake education Gold Christoph Kolbitsch For MR demos and education

Future Meetings

CCP PETMR Flagship: A framework for efficient synergistic spatiotemporal reconstruction of PET-MR dynamic data Start-date: end September 2017 Duration: 32 months Man-power: UCL: full-time postdoc (with visits to other sites) STFC (Erica Yang): 9 months: software optimisation STFC (Catherine Jones): 2 months: testing and deployment Job will be open from 13th of May https://atsv7.wcn.co.uk/search_engine/jobs.cgi?SID=amNvZGU9MTY0NjUzMSZ2 dF90ZW1wbGF0ZT05NjUmb3duZXI9NTA0MTE3OCZvd25lcnR5cGU9ZmFpciZicmFu ZF9pZD0wJmpvYl9yZWZfY29kZT0xNjQ2NTMxJnBvc3RpbmdfY29kZT02MzQ