NA4 Medical Imaging Geneva, September 26, 2006 Johan Montagnat.

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Presentation transcript:

NA4 Medical Imaging Geneva, September 26, 2006 Johan Montagnat

Agenda Production Being deployed on EGEE Services 11:00 GATE (radiotherapy planing) 11:10 3D MRI and PET simulation, cardiovascular image processing 11:20 Medical Imaging Use Cases in Health-e- child 11:30 SEE++ strabismus surgery planing 11:40 SPM-based early diagnosis of Alzheimer's 11:50 FreeSurfer-based brain image analysis 12:00 Biomedical infrastructure with P-GRADE 12:10 Medical Data Manager deployment 12:20 Wrap-up 12:30 Lunch Production Being deployed on EGEE Services

More applications... Clinical Decision Support System (UPV) Expert system for extracting clinically relevant knowledge from trained databases Pharmacokinetics (UPV) Contrast agent diffusion study over time series of 3D images GPTM3D (CNRS) Interactive volume reconstruction from large 3D data sets Bronze Standard (CNRS) Workflow-based medical image registration algorithms assessment

More services... Short Deadline Jobs Tackles the requirement of short and fast jobs Two specific SDJ queues deployed (LAL, UPV) Workflow management DAGMan supported by the EGEE middleware MOTEUR service-based workflow manager

More services... gPTM3D interface to grid file catalog File catalog content listing Integrated in gPTM3D interface Easy download and viewing Web-based interface to medical image repository User friendly interface to upload/download image stacks

Area-specific requirements Data confidentiality Data security addressed through gLiteIO + Fireman (ACLs) + Hydra (encryption) Only clients available in gLite3.0: gLiteIO, Fireman and hydra servers should be installed by the users Limited security through GFAL + LFC Interface to medical storage Using native medical image formats Interfaced to hospitals Picture and Archiving and Communication Systems (PACS) DICOM standard

Area-specific requirements Prioritization of jobs Need both efficient processing of short jobs and high priority jobs Currently tackled through Short Deadline Jobs More work on prioritization on-going in TCG WG High level interfaces Many application-dependent portals P-GRADE generic portal Interactivity Implemented using outbound connectivity Fine grain parallelism (MPI) MPI available through EGEE middleware