Fig.1. Dendrogram depicting NJ/ML/MP trees constructed using –MEGA 6

Slides:



Advertisements
Similar presentations
Characterization of Cellulolytic and Fermentative Communities in Everglades Soils Ilker Uz Soil and Water Science Department University of Florida.
Advertisements

AB 11 22 33 44 55 66 77 88 99 10  20  19  18  17  16  15  14  13  12  11  21  22  23  24  25  26  27  28.
Supplementary Fig. 1 Transmission electron micrographs of strains a CCR04 and b CCR80 grown on nutrient agar for 24 h. a b.
Figure 1.1 The observer in the truck sees the ball move in a vertical path when thrown upward. (b) The Earth observer views the path of the ball as a parabola.
Tropicihabitans flavus gen. nov., sp. nov., a new member of the family Cellulomonadaceae Moriyuki Hamada, Chiyo Shibata, Arif Nurkanto, Shanti Ratnakomala,
Cluster I. Cluster II Cluster III (contiued) Cluster IV.
Supplementary Fig. S1. 16S RNA Neighbor-joining (NJ) tree of Brevibacterium metallicus sp. nov. NM2E3 T (in bold) and related species of genus Brevibacterium.
The Tree of Life How do we select a gene sequence for comparison?
Supplementary Fig 1. Multiple sequence alignment of nucleotide sequences from amplified region of different Oryza sativa lines and wild species of rice.
S1 Fig Supplementary Image 1 |Phylogenetic analysis of fungal MAPKs. Phylogenetic tree was constructed by comparing amino acid sequences using the neighbor-joining.
The largest outbreak of hand; foot and mouth disease in Singapore in 2008: The role of enterovirus 71 and coxsackievirus A strains  Yan Wu, Andrea Yeo,
The identification of anaerobic bacteria using MALDI-TOF MS system VITEK MS Wonmok Lee, Myungsook Kim, Heejung Yim, Dongeun Yong, Seok Hoon Jeong, and.
Integration of Clustering and Multidimensional Scaling to Determine Phylogenetic Trees as Spherical Phylograms Visualized in 3 Dimensions  Introduction.
AtIAA18 AtIAA6 AtIAA19 VvIAA19 AtIAA10 AtIAA20 AtIAA7 AtIAA30 AtIAA11
gt 3 gt 1 gt 2 gt 4 swHEV sw-NL Netherlands (EU526647)
Fig. S1 Electron micrographs showing the general morphology and binary fission of negatively stained cells of strain 3-0-1T. Cells were grown on R2A agar.
Final Presentation [work in progress… work completed for Week 11 Journal Assignment] Kara Dismuke.
Evolutionary Origin and World Expansion of Malaria
Isolation of Kingella kingae in the oropharynx during K
Supplemental material for Wang et al
Full genomic analyses of human rotavirus G4P[4], G4P[6], G9P[19] and G10P[6] strains from North-eastern India: evidence for interspecies transmission.
Detection of Anaplasma phagocytophilum and Ehrlichia sp
A.K. Reddy, P. Garg, I. Kaur  Clinical Microbiology and Infection 
Inferred tree for species in the genus Solanum (S. ) labeled with HRFs
Skin microbiota is the main reservoir of Roseomonas mucosa, an emerging opportunistic pathogen so far assumed to be environmental  S. Romano-Bertrand,
Taxonomical classification is recognizing and registering the worlds organism diversity – continual changing knowledge about evolutionary and ecological.
Whole genome sequencing options for bacterial strain typing and epidemiologic analysis based on single nucleotide polymorphism versus gene-by-gene–based.
Development of 16S rRNA-based probes for the identification of Gram-positive anaerobic cocci isolated from human clinical specimens  A.C.M. Wildeboer-Veloo,
3-I 3 3-II Farm S1-25f swine (AY858911) Mexico
Evidence of genotypic diversity among Candida auris isolates by multilocus sequence typing, matrix-assisted laser desorption ionization time-of-flight.
The optimization and validation of the Biotyper MALDI-TOF MS database for the identification of Gram-positive anaerobic cocci  A.C.M. Veloo, E.D. de Vries,
Use of sequence-based typing and multiplex PCR to identify clonal lineages of outbreak strains of Acinetobacter baumannii  J.F. Turton, S.N. Gabriel,
Common Name: Genus Species Name: Significance/Relationship to story?
Tracking the naturally occurring mutations across the full-length genome of hepatitis B virus of genotype D in different phases of chronic e-antigen-negative.
Genotyping and origin of the emergent U. S

F. Magurano  Clinical Microbiology and Infection 
Distribution of the species of Achromobacter in a French Cystic Fibrosis Centre and multilocus sequence typing analysis reveal the predominance of A.
Ehrlichia canis phylogenetic analysis of the Borgo (Corsica) strain
(a) Subtree of the MetaPalette output tree for the Iowa prairie metagenome using organisms from the genus Bradyrhizobium. (a) Subtree of the MetaPalette.
R. Alonso, C. Muñoz, T. Peláez, E. Cercenado, M. Rodríguez-Creixems, E
Maximum likelihood (ML) unrooted tree based on the full-length 16S rRNA genes (A) and 31 conserved single-copy genes (B) showing the phylogenetic position.
Detection of nosocomial Clostridium difficile infections with toxigenic strains despite negative toxin A and B testing on stool samples  J. Stahlmann,
Phylogenetic tree based on 16S rRNA gene sequence comparisons over 1,260 aligned bases showing the relationship between species of the genus Actinomyces.
Phylogenetic tree constructed by the neighbor-joining method, showing the position of Peptostreptococcus species within Clostridium rRNA clusters XI, XIII,
Complete nucleotide sequence analysis of the VP1 genomic region of Echoviruses 6 isolated from sewage in Greece revealed 98% similarity with Echoviruses.
Phylogenetic tree of 38 Pseudomonas type strains, based on the V3-V5 region sequence of the 16S rRNA gene (V3 primer, positions 442 to 492; and V5 primer,
Comparison of one-tube multiplex PCR, automated ribotyping and intergenic spacer (ITS) sequencing for rapid identification of Acinetobacter baumannii 
Identification of the naturally occurring genes encoding carbapenem-hydrolysing oxacillinases from Acinetobacter haemolyticus, Acinetobacter johnsonii,
Detection of a new subgenotype of hepatitis B virus genotype A in Cameroon but not in neighbouring Nigeria  J.M. Hübschen, P.O. Mbah, J.C. Forbi, J.A.
K. S. Ko, T. Kuwahara, L. Haehwa, Y. -J. Yoon, B. -J. Kim, K. -H
Nucleotide sequence alignment of porA gene sequences from the examined English Neisseria gonorrhoeae porA mutants, compared to the porA sequences of previously.
L. Zhang, D. Raoult, P.-E. Fournier 
Isolation of Kingella kingae in the oropharynx during K
Phylogenetic comparison among selected Pasteurella multocida and Haemophilus influenzae species with completed genome sequences. Phylogenetic comparison.
Novel West Nile virus lineage 1a full genome sequences from human cases of infection in north-eastern Italy, 2011  L. Barzon  Clinical Microbiology and.
Comparison of gut microbiota alpha diversity in different preservatives based on 16S rRNA gene V3-V4 amplicon sequencing. Comparison of gut microbiota.
Genetic relationships of Haemophilus and Aggregatibacter species, using Escherichia coli as an outgroup. Genetic relationships of Haemophilus and Aggregatibacter.
T4P gene clusters in C. perfringens and C. difficile.
Volume 114, Issue 4, Pages (April 1998)
Dendrogram of the genus Serratia, constructed using the neighbor-joining method in MicroSeq software. 16S rRNA gene sequences of type strains of the species,
Distance tree of ITS2 rRNA gene sequences of 54 strains belonging to species known as black-grain mycetoma agents. Distance tree of ITS2 rRNA gene sequences.
Phylogenetic tree based on predominant 16S rRNA gene sequences obtained by C4–V8 Sutterella PCR from AUT-GI patients, Sutterella species isolates, and.
Phylogenetic tree analysis of the Xenopus type III IFNs (A) with other known IFNs and the putative receptors (B) with relevant receptor families. Phylogenetic.
Dendrogram relationships by 16S rRNA gene similarity of the A
Dendrogram clustering the MALDI-TOF MSP obtained from at least 20 mass spectra of strains belonging to the C. haemulonii complex species and related species.
Tree depicting the phylogenetic relationships of all strains included in this study. Tree depicting the phylogenetic relationships of all strains included.
Fig. 3 Postnatal assembly of the humanized gut microbiota.
Unrooted neighbor-joining tree of 16S rRNA gene sequences from low-G+C-content gram-positive bacteria, obtained from clone libraries. Unrooted neighbor-joining.
(A and B) Maximum-likelihood trees of 28 strains of Pantoea agglomerans and closely related species, constructed using concatenated sequences of six protein-coding.
Presentation transcript:

Fig.1. Dendrogram depicting NJ/ML/MP trees constructed using –MEGA 6 Strain JC272T and 22 others related to type 2 rRNA gene cluster Paraclostridium bifermentans gen. nov. comb. nov. ATCC638T (AVNC01000016)# Paeniclostridium sordellii gen. nov. comb. nov. ATCC9714T (AB075771) Paeniclostridium ghonii comb. nov. ATCC25757T (X73451) Eubacterium_tenuae ATCC25553T (FR749984) Romboustia lituseburensis ATCC25759T (M59107) Intestinibacter barlettii DSM16795T (ABEZ02000021) Terrisporobacter mayomebi DSM6539T (FR733682) Terrisporobacter glycolicus DSM1288T (X76750) Clostridium difficile ATCC1689T (AB075770) Clostridium mangenotii ATCC25761T (FR733662) Clostridium hiranonis JCM10541T (AB023970) Peptostreptococcus stomatis W2278T (DQ160208) Peptostreptococcus russellii RT10-BT (AY167952) Tepidibacter mesophilus B1T (GQ231514) Clostridium thermoalcaliphilum ATCC51508T (FR749953) Clostridium paradoxum 51510T (Z69939) Clostridium sticklandii ATCC12662T (FP565809) Clostridium litorale ATCC49638T (X77845) Clostridium aceticum DSM1496T (Y18183) Clostridium aerotolerans DSM5434T (X76163) Clostridium acidiurici ATCC7906T (M59084) Clostridium butyricum ATCC19398T (AJ458420) and related strains belonging to type 1 rRNA gene cluster Bacillus_subtilis DSM10T (AJ276351) 0.02 88 100 98 99 100 76 100 81 98 100 65 84 93 74 71 Dendrogram depicting NJ/ML/MP trees constructed using –MEGA 6 Full length sequences of 23 strains of Paraclostridium benzoelyticum gen. nov., sp. nov. obtained from various marine sources of Gujarat, India. # = Clostridium bifermentans ATCC638T (AVNC01000016) now proposed for reclassification as type species of the genus Paraclostridium 90 100 100 75 84 100 98 93 100/100/100