Tyler Eaton, Dan Horton, Ann Amis, Ted Cottrell, Tracie Jenkins

Slides:



Advertisements
Similar presentations
A genetic assessment of Bay Scallop restoration in Bogue Sound, North Carolina Sherman, M. 1, D. Schmidt 2, A.E. Wilbur 1 1 Department of Biology and Marine.
Advertisements

DNA Fingerprinting and Forensic Analysis
Identification of molecular markers for selection of supermale (YY) asparagus plants Gebler et al
17 cm 6 mm Kellet’s whelk, Kelletia kelletii Habitat: Rocky reef/kelp forests. Partial migration offshore during winter? Carnivorous predator and scavenger.
17 cm 6 mm. 17 cm 6 mm Kellet’s whelk, Kelletia kelletii Habitat: Rocky reef/kelp forests. Partial migration offshore during winter? Carnivorous predator.
Using museum specimens to identify MOTUs in larval scarab beetles Andrew Mitchell, NSW DPI Kelly Rigg, Charles Sturt University Gus Campbell, NSW DPI Tom.
DNA Fingerprinting Sotheavy Vann. What is DNA Fingerprinting?  “The generation of a set of distinct DNA fragments from a single DNA sample”  Aka DNA.
Genetic variation on mtDNA Cytb sequence of three populations of Chilean jack mackerel (Trachurus murphyi ) from the Southern Pacific Min ZHANG, Yong-jiu.
Caitlyn Roan, Tara Connor, and John Grimsley. The Blenny: Ophioblennius One of the most diverse suborders of teleost fishes 723 species 127 genera 6 families.
Biotechnology. Comparative genomics also has been used to identify recently mobilized transposons in genetically diverse humans. For example, over 600.
Maria Eugenia D’Amato Slide 1
POLYMERASE CHAIN REACTION AMPLIFYING DNA What do you need to replicate DNA? umZT5z5R8.
Background  The soft shell clam, Mya arenaria, currently occupies a large geographical range in the northern hemisphere.  Soft shell clams are found.
Phylogeography of the Seastar Linckia laevigata and its obligate parasite Thyca crystallina Bolanle Akinronbi, Marta Muñoz, Paul Barber.
Manipulation of DNA. Restriction enzymes are used to cut DNA into smaller fragments. Different restriction enzymes recognize and cut different DNA sequences.
DNA Analyses Used to Understand the Effect of Acetamiprid And Acetamiprid plus Bifenthrin on Invasive and Non-Invasive Subterranean Termites Tracie. M.
Species boundaries, phylogeography and conservation genetics of the red- legged frog (Rana aurora/drytonii) complex Presented by: Chris Burton & Matt Meyer.
AP Biology Biotech Tools Review AP Biology Biotech Tools Review  Recombinant DNA / Cloning gene  restriction enzyme, plasmids,
Biotech. Cloning a mammal PCR This is the polymerase chain reaction. It is a technique to multiply a sample of DNA many times in a short period of time.
Northern Star Coral (Astrangia poculata) Populations from the New Jersey Coast. Abstract- This project investigated the distribution and molecular evolution.
DNA Fingerprinting. Introduction to DNA Fingerprinting Technicians in forensic labs are often asked to do DNA profiling or “fingerprinting” Restriction.
Biology – The Continuity of Life Objective 3 & 4 Objective 3 & 4 –Describe the various ways genetic engineering can change the organisms around us. –Demonstrate.
Biotech. Southern Blotting Through a series of steps, DNA that has been separated by electrophoresis is applied to a membrane of nylon or nitrocellulose.
Plant Breeding Shree Krishna Adhikari ©Shree Krishna Adhikari.
LAB 6 DNA FINGERPRINTING. BUILD the GEL FRAME Position comb and lock in place in side slots.
The Case of the Crown Jewels: Investigate a Crime Scene Using DNA Restriction Analysis (DNA Fingerprinting) Module developed at Boston University School.
De Novo Assembly of Mitochondrial Genomes from Low Coverage Whole-Genome Sequencing Reads Fahad Alqahtani and Ion Mandoiu University of Connecticut Computer.
Gene flow and speciation. Mechanism for speciation Allopatric speciation Sympatric speciation.
CHPT. 20 DNA TECHNOLOGY & GENOMICS & AP LAB #6A. Restriction Enzymes - -found in bacteria, they prevent invasion by foreign bacteria -cut specific.
Simple-Sequence Length Polymorphisms
GENETIC MARKERS (RFLP, AFLP, RAPD, MICROSATELLITES, MINISATELLITES)
Mackenzie Damon, Nita George, Amy Tomko – *Sayville High School
Karyotypes and DNA Fingerprinting
+ Genotyping of phosphine resistance in North Indian populations of lesser grain borer, Rhyzopertha dominica (F.). Rahul Chandel, Vimal Dwivedi,Sakshi.
One method of rapidly analyzing and comparing DNA is gel electrophoresis. Gel electrophoresis separates macromolecules - nucleic acids or proteins - on.
Supervisor : Prof. Dr. Iftikhar Hussain
Tracie M. Jenkins, Brian T. Forschler, Dan R. Suiter, Tyler D. Eaton
Section 3: Gene Technologies in Detail
Figure 2 Analysis of restriction sites that define the 5′ and 3′ boundaries of the region of identity between RHD and the Ce allele. TaqI (a) and HinfI.
Cloning Overview DNA can be cloned into bacterial plasmids for research or commercial applications. The recombinant plasmids can be used as a source of.
The Indispensible Forensic Science Tool
Biotech Tools Review
Relationship between Genotype and Phenotype
Genetic Evaluation of Recruitment Success of Deployed Domesticated Crassostrea virginica Oysters on a Man-made Reef in the Great Wicomico River, Virginia.
Chapter 21 Nucleic Acids and Protein Synthesis
Identification of imprinted genes and imprinted DMRs
DNA ELECTROPHORESIS OR DNA FINGERPRINTING.
Wolbachia bacteria suppress A
What is the purpose of selective breeding?
Electrophoresis A process used to separate DNA.
Genetic Technology The future of genetics!?!.
MUTATIONS.
Simulating Genetic Screening
DNA Fingerprinting.
Sequential Steps in Genome Mapping
A Mutation Hot Spot for Nonspecific X-Linked Mental Retardation in the MECP2 Gene Causes the PPM-X Syndrome  Sabine M. Klauck, Susan Lindsay, Kim S. Beyer,
Volume 1, Issue 5, Pages (May 2012)
E. Wang, Y. -C. Ding, P. Flodman, J. R. Kidd, K. K. Kidd, D. L
Lecture #9 Date _____ Chapter 20~ DNA Technology & Genomics.
Fig. 1. The geographic range of D
9-3 DNA Typing with Tandem Repeats
Genetic Engineering How do scientists use restriction enzymes?
Gene expression separates male and female single gametocytes into distinct populations. Gene expression separates male and female single gametocytes into.
Southern blot analysis of ΔpksP mutant generated in the Af293 background. Southern blot analysis of ΔpksP mutant generated in the Af293 background. (A)
Relationship between Genotype and Phenotype
Sampling locations and IDs for accessions sequenced in this study.
GENTETIC ENGINEERING VOCABULARY.
Ribotyping methodology.
Meiotic DNA Breaks at the S. pombe Recombination Hot Spot M26
Presentation transcript:

Tyler Eaton, Dan Horton, Ann Amis, Ted Cottrell, Tracie Jenkins DNA Markers for Plum curculio (Conotrachelus nenuphar) (Herbst) collected from peaches in Byron, Georgia Tyler Eaton, Dan Horton, Ann Amis, Ted Cottrell, Tracie Jenkins

Background Plum curculio is a pest of stone fruit in eastern North America There are two strains: northern univoltine and southern multivoltine The southern multivoltine strain is a source of concern because second generation larvae may be present in the fruit at harvest

Purpose To expand on the work of D. Pfeiffer by focusing on samples collected in Georgia To determine if DNA markers can distinguish samples collected in Georgia from others To determine how many DNA markers can distinguish between samples

Purpose mtDNA vs. Wolbachia wsp gene Sequencing vs. RFLP Power of mtDNA cytochrome oxidase I gene (COI) to differentiate geographically-specific collections Zhang et al. 2008. Ann. Entomol. Soc. Am 101: 824-832

Power of COI sequence to differentiate PC: Haplotype (State) A (MA) E (MA) B (MA) F (NY) C (NY) G (NY, MA) D (NY) 100 Curculio hilgendorfi Northern R (NJ) S (VA) T (NJ, VA, WV) U (NJ) V & W (VA) Mid-Southern/ Mid-Atlantic X (GA, Byron 2011) H (MA) I (FL) J ( FL) K (GA) L (VA, FL, GA, WV) M (WV) N (VA) O, P, Q (WV) Southern

Mid-Southern (Mid-Atlantic) Wolbachia Strains in PC Across Eastern US Geographic Populations Strains (w1- w3, GenBank GU013550-GU013552) Northern w1, w2, w1 + w2 Mid-Southern (Mid-Atlantic) w2, w1 + w2, few w3 Southern w3 only in GA (all samples tested to date), w1 + w2 and w3 in FL

Male X Female Mating Examples* Wolbachia: Inter-strain Effects on Fecundity Male X Female Mating Examples* Fecundity w1 X w1 High w1 X w2 Reduced w1 X w3 w2 X w3 *FL females have all strains and reciprocal crosses (females X males) compatible across the range

What is the affect of Wolbachia on intracolony fecundity in Byron,GA? Date Collected (2012) Period Covered Females Males 2/21 2/18-21 38 33 2/23 2/22-23 35 2/24 19 21 2/27 2/25-27 28 2/29 2/28-29 27 25 TOTALS 150 152 2 = 0.0134, df = 1, P > 0.9 ~ 1:1 ratio with no apparent reduction in fecundity because males and females both carry the same Wolbachia strain

PCR-generated 590 bp wsp gene cut with restriction enzyme HindIII No cut site w2 461 bp cut w3 253 bp cut DNA Marker w1 w2 w3 600 bp 500 bp 400 bp 300 bp 200 bp 100 bp

Observations (1) mtDNA can distinguish Byron samples from other samples (2) There are three Wolbachia strains (w1, w2, w3) along the Eastern U.S. (3) Only one strain, w3, has been identified to date in GA (4) RFLP can be used to determine which Wolbachia strain is causing infection

Conclusions Total sequencing expense is more than RFLP expense. Sequencing cost is $8 - $12 more per sample than RFLP. PCR-generated RFLP fingerprints provide promise as a low cost alternative to sequencing, but need further investigation.

Thank You