Department of Laboratory Medicine, CORE Diagnostics, Gurgaon, India

Slides:



Advertisements
Similar presentations
Diagnosis with PCR This is a preparation of DNA. We zoomed in a portion of a gene. We know that two primers, Forward and Reverse, will hybridize at specific.
Advertisements

Research Techniques Made Simple: T-Cell Receptor Gene Rearrangement
Case 3 울산대학교 의과대학 서울아산병원 병리과 김선아 2010 년 10 월 가을학술대회 신경병리 연구회.
Introduction to Pathology. What is pathology Pathology is the scientific study of disease. In its broadest sense, it is the study of how the organs and.
AIIA Lab, Department of Informatics Aristotle University of Thessaloniki Z.Theodosiou, F.Raimondo, M.E.Garefalaki, G.Karayannopoulou, K.Lyroudia, I.Pitas,
Comparative Genomic Hybridization (CGH). Outline Introduction to gene copy numbers and CGH technology DNA copy number alterations in breast cancer (Pollack.
Introduction of Cancer Molecular Epidemiology Zuo-Feng Zhang, MD, PhD University of California Los Angeles.
Molecular Testing of lung cancer in routine practice
Genetic Testing in Genomic Medicine Gail H. Vance M.D. Professor, Department of Medical & Molecular Genetics Indiana University School of Medicine.
Paola CASTAGNOLI Maria FOTI Microarrays. Applicazioni nella genomica funzionale e nel genotyping DIPARTIMENTO DI BIOTECNOLOGIE E BIOSCIENZE.
Case Study 62 Kenneth Clark, MD. Question 1 This is a 32-year-old woman with progressive distortion of taste and smell. After seeing her primary care.
Clinical Trials, TCGA: Deep Integrative Research RT, Imaging, Pathology, “omics” Joel Saltz MD, PhD Director Center for Comprehensive Informatics.
Genetic Alterations of TP53 Gene in Brain Astrocytic Tumours Methodology Θ Eighty-three brain tumor biopsies were collected and used in this study. Thirty.
Fluorescent In Situ Hybridization (FISH) to Identify Genetic Changes in Fine Needle Biopsy of Lung Lesions Prepared by Jin Jen NCI.
PCR assay of intragenic mutation lesions induced by monoenergetic fission neutrons and gamma rays in Drosophila Part I: Gamma rays Nanette Brand 1 Nonhlanhla.
ICNCT-16, June 2014, Helsinki Glioma heterogeneity and the L-Amino acid transporter-1 (LAT1): A first step to stratified BPA-based BNCT? D. Ngoga 1 ; C.
Introduction to Pathology
PCR Y.Martinez, LSHS, 2014 DIRECTIONS: COPY NOTES IN ORANGE.
Annals of Oncology 23: 298–304, 2012 종양혈액내과 R4 김태영 / prof. 김시영.
Date of download: 6/21/2016 Copyright © 2016 American Medical Association. All rights reserved. From: Advances in Translational Research in Neuro-oncology.
Intratumoral topography of CNS gliomas revealed by diffusion tensor imaging: correlations with tumor volume and grade A. Jakab 1, P. Molnár 2, M. Emri.
Ligation In-situ Hybrdization Christopher Itoh 1, Joel Credle 1, Rajni Sharma 2, H. Benjamin Larman 1 1 Department of Immunopathology, Johns Hopkins University.
In The Name Of God Introduction to Dermatopathologic
Prevalence of oncogenic Human Papillomavirus genotypes in women with vulvar and cervical squamous cell carcinoma in Botswana Patricia Rantshabeng1,2 ,
LG Fibromyxoid Sarcoma Proliferative Myositis Solitary Fibrous Tumor
Fig. 1. EGFR content as determined by fluorescence in situ hybridization (FISH) and immunohistochemical staining. FISH was performed with the EGFR ( red.
Synthetic Circulating Cell-free DNA as Quality Control Materials for Somatic Mutation Detection in Liquid Biopsy for Cancer R. Zhang, R. Peng, Z. Li, P.
Detection of 1p and 19q Loss in Oligodendroglioma by Quantitative Microsatellite Analysis, a Real-Time Quantitative Polymerase Chain Reaction Assay  Janice.
Immunohistochemical Characterization and Sensitivity to Human Adenovirus Serotypes 3, 5, and 11p of New Cell Lines Derived from Human Diffuse Grade II.
Department of Laboratory Medicine, CORE Diagnostics, Gurgaon, India
Case Study 49 Edward D. Plowey.
Figure 1 Histopathology of low-grade glioma
The pathological diagnosis of diffuse gliomas: towards a smart synthesis of microscopic and molecular information in a multidisciplinary context  Pieter.
Nat. Rev. Clin. Oncol. doi: /nrclinonc
Lu Chen, PhD, Brienne E. Engel, PhD, Eric A. Welsh, PhD, Sean J
Nat. Rev. Neurol. doi: /nrneurol
High-Throughput, Multiplex Genotyping Directly from Blood or Dried Blood Spot without DNA Extraction for the Screening of Multiple G6PD Gene Variants.
Hendrikus J. Dubbink, Peggy N. Atmodimedjo, Ronald van Marion, Niels M
Fausto J. Rodriguez, M. Adelita Vizcaino, Ming-Tseh Lin 
Focus on central nervous system neoplasia
Rapid and Simple Detection of Hot Spot Point Mutations of Epidermal Growth Factor Receptor, BRAF, and NRAS in Cancers Using the Loop-Hybrid Mobility Shift.
Simple Detection of Telomere Fusions in Pancreatic Cancer, Intraductal Papillary Mucinous Neoplasm, and Pancreatic Cyst Fluid  Tatsuo Hata, Marco Dal.
Development and Applications of a BRAF Oligonucleotide Microarray
Mucinous Differentiation Correlates with Absence of EGFR Mutation and Presence of KRAS Mutation in Lung Adenocarcinomas with Bronchioloalveolar Features 
Molecular Classification of MYC-Driven B-Cell Lymphomas by Targeted Gene Expression Profiling of Fixed Biopsy Specimens  Christopher D. Carey, Daniel.
Detection of KRAS and BRAF Mutations in Colorectal Carcinoma
Higher Dosage of the Epidermal Growth Factor Receptor Mutant Allele in Lung Adenocarcinoma Correlates with Younger Age, Stage IV at Presentation, and.
Genomic Approaches to High Grade Gliomas
Nat. Rev. Clin. Oncol. doi: /nrclinonc
Jamal H. Carter, Samantha N. McNulty, Patrick J. Cimino, Catherine E
Development of a Quantitative Real-Time Polymerase Chain Reaction Assay for the Detection of the JAK2 V617F Mutation  Elizabeth C. Wolstencroft, Katy.
Polymerase Chain Reaction
A Rapid, Sensitive Assay to Detect EGFR Mutation in Small Biopsy Specimens from Lung Cancer  Yasushi Yatabe, Toyoaki Hida, Yoshitsugu Horio, Takayuki.
Role of Chromosome 3q Amplification in Lung Cancer
Ayalew Tefferi, MD  Mayo Clinic Proceedings 
Development of an Allele-Specific Real-Time PCR Assay for Discrimination and Quantification of p63 R279H Mutation in EEC Syndrome  Vanessa Barbaro, Letizia.
Rapid and Sensitive Real-Time Polymerase Chain Reaction Method for Detection and Quantification of 3243A>G Mitochondrial Point Mutation  Rinki Singh,
Amplification Refractory Mutation System, a Highly Sensitive and Simple Polymerase Chain Reaction Assay, for the Detection of JAK2 V617F Mutation in Chronic.
Case Study 15 Gabrielle Yeaney, M.D..
Gayatry Mohapatra, Rebecca A. Betensky, Ezra R
Utilizing NGS-Data to Evaluate Anti-PD-1 Treatment
Rapid Polymerase Chain Reaction-Based Detection of Epidermal Growth Factor Receptor Gene Mutations in Lung Adenocarcinomas  Qiulu Pan, William Pao, Marc.
Clinical Implications of Variant ALK FISH Rearrangement Patterns
The 7th EAHSC Detection of human papillomavirus DNA in tumors from Rwandese breast cancer patients Dr. Habyarimana T1,2,3, Attaleb M1, Mazarati JB3, Bakri.
Neuropathology at Southmead
Method of Mutation Analysis May Contribute to Discrepancies in Reports of V599EBRAF Mutation Frequencies in Melanocytic Neoplasms  Christopher J. Miller,
Practical Bioinformatic DNA-Sequencing Pipeline for Detecting Oncogene Amplification and EGFRvIII Mutational Status in Clinical Glioblastoma Samples 
Fig. 2. Kaplan-Meier plots for PFS and OS of 37 patients according to histological diagnosis (A and D), the extent of tumor resection (B and E), and adjuvant.
Rapid Detection of HIV-1 subtype C Integrase resistance mutations by the Use of High-Resolution Melting Analysis Tendai Washaya BSc, Msc. Pre-PhD Student.
Cancer/Tumor Profiling Market to Reach $87.1 Billion By 2023.
Presentation transcript:

Department of Laboratory Medicine, CORE Diagnostics, Gurgaon, India Does Molecular Profile Trump Morphology in Glial Neoplasms: An Indian perspective, based on the Current WHO Classification (2016) Shivani Sharma, Sambit K. Mohanty, Arbind Singh, Anurag Sharma, Bekleshwar Salona, Mukesh Kumar, Mohit Kumar, Santosh Pandey, Rahul Katara, Sankar Mohan, Vipin Kumar, Joydeep Mukherjee, Ajay Pandita, Lata Kini Department of Laboratory Medicine, CORE Diagnostics, Gurgaon, India Introduction: Gliomas are the most common and a heterogeneous group of primary tumors of the central nervous system. Histomorphology has been the mainstay in the diagnosis of gliomas till it was realized that alone it lacks the precision that is needed for tailored treatment of individual patients. With accumulating data and evidences on these molecular signatures, it has been realized that an integrated phenotypic and genotypic approach defines these group of tumors. The 2007 World Health Organization (WHO) classification was based on the concept of histogenesis where in the characterization of these tumors was based on histomorphology, ultrastructural features, and lineage associated immunohistochemical markers. WHO classification system for 2016 reflects a major paradigm shift in the diagnosis and nomenclature of glial tumors to improve the management of the patient by yielding biologically homogenous and narrowly defined entities. Results: Figure 1: Percentage distribution of cases according to WHO 2007 classification. Figure 2: Percentage distribution of cases according to WHO 2016 classification Figure 3: Categories of glial neoplasms and their comparison per WHO, 2007 and WHO, 2016 Aim: We revisited and applied the current WHO guidelines in 151 glial neoplasms to evaluate and understand its utility. 1p32 1q42 19p13 19q13 Materials and Methods: This is a retrospective study that includes 151 glial neoplasms H&E slides were reviewed per the 2007 WHO classification. A review of 1p/19q co-deletion and IDH mutation status was done and the results were compiled to assign the new nomenclature according to the latest 2016 WHO CNS tumor classification system. FISH assay was performed on FFPE tissue sections following tumor area selection. FISH assay was then performed in three basic steps namely, pre-treatment of the slides, co-denaturation, and hybridization of FISH probes and slides, and post-hybridization washing. Dual color probe signals were assessed keeping green (CEP17) signals as the internal control. A tumor was considered to have 1p deletion when the 1p probe to 1q probe ratio (1p/1q) ratio was <0.80 and was considered to have 19q deletion when the 19q probe to 19p probe ratio (19q/19p) was <0.80. DNA was extracted from the representative tumor block and polymerase chain reaction with sequencing was performed. The PCR product sequence was then aligned with the wild type sequence to detect the codons (hot spot region) of interest. Figure 4: Oligodendroglioma (H&E, 400x). Figure 5: IDH1 mutation on exon4, PCR with sequencing Figure 6: 1p and 19q deletion of oligodendroglioma tumor cell nuclei (FISH; 60x) Conclusions: Diffuse astrocytoma, mutant type outnumbered the wild type. Diffuse gliomas, IDH wild type are an uncommon diagnosis and need further careful evaluation to completely exclude other low-grade lesions such as gangliogliomas. Demonstration of both IDH gene mutation and 1p/19q whole arm co-deletion is mandatory to define oligodendroglial neoplasms. Three cases of diffuse glioma and one of anaplastic astrocytoma were merged to the oligodendroglial group after correlation with characteristic molecular signatures (IDH1 mutation and 1p/19q co-deletion). Vice versa, four cases that were morphologically diagnosed as oligodendrogliomas were termed as diffuse astrocytoma IDH wild type (n=2), and IDH mutant (n=2) on molecular correlation. This transition highlights that the molecular classification trumps over morphology in brain tumors. 60% tumors of oligoastrocytic group could be categorized as pure oligodendroglial or astrocytic after molecular evaluation. GBM(O) category has been eliminated that comprised of 5% cases of the tumors in the present study. Our study emphasizes the utility of molecular analysis in the classification of the glial neoplasms as pure oligodendroglial or astrocytic in nature, validating and reiterating the new WHO classification.