Avery A. Sandberg, Julia A. Bridge  Cancer Genetics and Cytogenetics 

Slides:



Advertisements
Similar presentations
PDGF  c-sis of Simian Sarcoma) Dermatofibrosarcoma.
Advertisements

Figure 1 Myotubularin exhibits a tyrosine phosphatase activity
MAKRLVLFATVVIALVALTVAEGEASRQLQCERELQESSLEACRLVVDQQLAGRLPWSTGLQMRCCQQLRDISAKCRPVAVSQVARQYGQ MAKRLVLFATVVIGLVALTVAEGEASRQLQCERELQESSLEACRLVVDQQLAGRLPWSTGLQMRCCQQLRDISAKCRPVAVSQVARQYGQ.
A partial nontandem duplication of the MLL gene in four patients with acute myeloid leukemia  Iveta Šárová, Jana Březinová, Zuzana Zemanová, Libuše Lizcová,
Cytogenetic and molecular events in adenoma and well-differentiated thyroid follicular- cell neoplasia  Paola Caria, Roberta Vanni  Cancer Genetics and.
Genetic Testing in Sarcoma: Current practice and future perspectives
Tumor spectrum analysis in p53-mutant mice
Volume 204, Issue 1, Pages (January 2011)
Volume 88, Issue 5, Pages (March 1997)
Figure 1. Validation of the chromosome 22 array
Down Syndrome: Genes, Model Systems, and Progress towards Pharmacotherapies and Clinical Trials for Cognitive Deficits Cytogenet Genome Res 2013;141:
Volume 6, Issue 4, Pages (October 2000)
Mark M Metzstein, H.Robert Horvitz  Molecular Cell 
Tony L. Ng, Maureen J. O'Sullivan, Catherine J
Volume 2, Issue 5, Pages (November 2002)
Volume 1, Issue 5, Pages (September 2015)
A Member of a Gene Family on Xp22
COL1A1-PDGFB Fusion Transcripts in Fibrosarcomatous Areas of Six Dermatofibrosarcomas Protuberans  Jian Wang, Yosuke Morimitsu, Sumika Okamoto, Masanori.
Undifferentiated Small Round Cell Sarcomas with Rare EWS Gene Fusions
The Antirrhinum ERG gene encodes a protein related to bacterial small GTPases and is required for embryonic viability  Gwyneth C. Ingram, Rüdiger Simon,
Volume 57, Issue 5, Pages (May 2000)
Functional Consequences of PRODH Missense Mutations
Dermatofibrosarcoma protuberans occurring in two brothers: Role of environmental or genetic factors?  Thomas Jouary, MD, Cécile Beltran, MD, Jean-Michel.
The SPCH1 Region on Human 7q31: Genomic Characterization of the Critical Interval and Localization of Translocations Associated with Speech and Language.
A Novel Gene Causing a Mendelian Audiogenic Mouse Epilepsy
Volume 10, Issue 4, Pages (April 2006)
Volume 117, Issue 4, Pages (October 1999)
Transcriptional Control of the Mouse Col7a1 Gene in Keratinocytes: Basal and Transforming Growth Factor-β Regulated Expression  Michael Naso, Jouni Uitto,
Volume 88, Issue 5, Pages (March 1997)
Douglas J Guarnieri, G.Steven Dodson, Michael A Simon  Molecular Cell 
Distinct Protein Domains and Expression Patterns Confer Divergent Axon Guidance Functions for Drosophila Robo Receptors  Bettina Spitzweck, Marko Brankatschk,
Size Polymorphisms in the Human Ultrahigh Sulfur Hair Keratin-Associated Protein 4, KAP4, Gene Family  Naoyuki Kariya, Yutaka Shimomura, Masaaki Ito 
Volume 87, Issue 2, Pages (October 1996)
HUA1 and HUA2 Are Two Members of the Floral Homeotic AGAMOUS Pathway
Volume 10, Issue 8, Pages (April 2000)
lin-35 and lin-53, Two Genes that Antagonize a C
John D. Rioux, Valerie A. Stone, Mark J
Hiroaki Matsunami, Linda B Buck  Cell 
N-terminal extension of a gene using peptides mapping upstream to an annotated start site. N-terminal extension of a gene using peptides mapping upstream.
Array Comparative Genomic Hybridization Detects Chromosomal Abnormalities in Hematological Cancers That Are Not Detected by Conventional Cytogenetics 
Volume 90, Issue 4, Pages (August 1997)
The PHANTASTICA Gene Encodes a MYB Transcription Factor Involved in Growth and Dorsoventrality of Lateral Organs in Antirrhinum  Richard Waites, Harinee.
Disruption of Contactin 4 (CNTN4) Results in Developmental Delay and Other Features of 3p Deletion Syndrome  Thomas Fernandez, Thomas Morgan, Nicole Davis,
Sadaf Naz, Chantal M. Giguere, David C. Kohrman, Kristina L
Protein sequence alignments for the BcfD (A) and StfH (B) allelic groups from S. Newport. Protein sequence alignments for the BcfD (A) and StfH (B) allelic.
sac mutants are hypersensitive to IR
HEPN1, a novel gene that is frequently down-regulated in hepatocellular carcinoma, suppresses cell growth and induces apoptosis in HepG2 cells  Mei Chung.
Deletion of PREPL, a Gene Encoding a Putative Serine Oligopeptidase, in Patients with Hypotonia-Cystinuria Syndrome  Jaak Jaeken, Kevin Martens, Inge.
WES identification of heterozygous compound mutations in ALPI
Characterization and Mutation Analysis of Human LEFTY A and LEFTY B, Homologues of Murine Genes Implicated in Left-Right Axis Development  K. Kosaki,
Disruption of ERBB2IP Is not Associated with Dystrophic Epidermolysis Bullosa in Both Father and Son Carrying a Balanced 5;13 Translocation  Margarita.
WES identification of heterozygous compound mutations in ALPI
Volume 2, Issue 4, Pages (April 2002)
BRI1/BAK1, a Receptor Kinase Pair Mediating Brassinosteroid Signaling
Volume 57, Issue 3, Pages (March 2000)
Activation of MET by Gene Amplification or by Splice Mutations Deleting the Juxtamembrane Domain in Primary Resected Lung Cancers  Ryoichi Onozato, MD,
(A) yellow cDNA comparison among wild-type and ch mutants
Figure 1 Schematic of the OPA3 gene and OPA3 protein isoform b
Mutations in CHEK2 Associated with Prostate Cancer Risk
Mutation of the Ca2+ Channel β Subunit Gene Cchb4 Is Associated with Ataxia and Seizures in the Lethargic (lh) Mouse  Daniel L Burgess, Julie M Jones,
by Pan Tao, Xiaorong Wu, and Venigalla Rao
Volume 10, Issue 10, Pages (March 2015)
Delineating cancer evolution with single-cell sequencing
Fang Wang, Yunfeng Wang, Jie Ding, Jiyun Yang  Kidney International 
Key NGS principles. Key NGS principles. A and B, identification of structural variants: Longer (paired-end or mate-pair) sequencing reads are more adept.
Volume 1, Issue 4, Pages (March 1998)
Multicentric dermatofibrosarcoma protuberans in patients with adenosine deaminase– deficient severe combined immune deficiency  Chimene Kesserwan, MD,
Update on glucocorticoid action and resistance
Fig. 3 Genome editing of the MSTN gene.
Volume 18, Issue 6, Pages (June 2010)
Presentation transcript:

Updates on the cytogenetics and molecular genetics of bone and soft tissue tumors  Avery A. Sandberg, Julia A. Bridge  Cancer Genetics and Cytogenetics  Volume 140, Issue 1, Pages 1-12 (January 2003) DOI: 10.1016/S0165-4608(02)00848-8

Fig. 1 Histologic appearance of dermatofibrosarcoma protuberans (DFSP) and its fibrosarcomatous variant. (A) Dermal location of DFSP with uninvolved zone beneath atrophic dermis. (B) Characteristic microscopic appearance of DFSP with interwoven fascicles of cells forming a storiform pattern. (C) Fascicular herringbone pattern of growth with frequent mitoses representative of the fibrosarcomatous variant of DFSP. (D) Fibrosarcomatous variant of DFSP infiltrating underlying muscle (Bowne et al., 2000) [86]. Cancer Genetics and Cytogenetics 2003 140, 1-12DOI: (10.1016/S0165-4608(02)00848-8)

Fig. 2 Karyotype of a giant cell fibroblastoma (GCF) showing a balanced translocation, 46,XY,t(17;22)(q21.33;q13.1), as the sole cytogenetic anomaly (arrows) (Craver et al., 1995) [34]. This cytogenetic change is identical to that seen in DFSP. Cancer Genetics and Cytogenetics 2003 140, 1-12DOI: (10.1016/S0165-4608(02)00848-8)

Fig. 3 Karyotype of a DFSP with 50 chromosomes, including a ring chromosome (r), the latter being the most common cytogenetic change in DFSP and GCF. Trisomies 4, 5, and 8 are present. The karyotype is one of four DFSP with ring chromosomes demonstrated with FISH to contain chromosome 17 sequences [55]. In subsequent years this research group confirmed and extended the nature of these ring chromosomes (Pédeutour et al., 1994) [56–58]. Cancer Genetics and Cytogenetics 2003 140, 1-12DOI: (10.1016/S0165-4608(02)00848-8)

Fig. 4 Breakpoints in COL1A1 and PDGFB in DFSP. Shown is a partial genomic structure of the COL1A1 gene from exon 1 to exon 46, with the appropriate location of the breakpoints in eight DFSP indicated by arrows pointing to the various exons affected. The breakpoint in PDGFB gene usually involves exon 2 solely. Open boxes represent untranslated regions (Wang et al., 1999) [22]. Cancer Genetics and Cytogenetics 2003 140, 1-12DOI: (10.1016/S0165-4608(02)00848-8)

Fig. 5 Schematic presentation of the molecular events associated with the COL1A1-PDGFB gene fusion in DFSP or GCF according to Simon et al [69]. This scheme is to serve as a guide in the discussion related to the molecular events presented by these authors and outlined in some detail in the text. In (A) is shown the chimeric COL1A1-PDGFB cDNA map. In (B) is shown the deduced chimeric protein map. In (C) is shown the deduced chimeric protein map compared with the wild-type proteins. COL1A1 sequences are shown in white and those of PDGFB as shaded areas. The black areas and white areas on the left of the chimeric protein in (C) indicate the COL1A1-PDGFB signal peptide sequences, respectively. Arrows indicate mutation points on the COL1A1-PDGFB sequence; arrowheads point to proteolytic cleavage sites. C5 and P5 refer to respective mutated pcDNA 3.1-T94796 construction. Numbers to the left of arrowheads indicate the amino acid (aa) position on the chimeric COL1A1-PDGFB protein sequence, which begins at the first methionine of the consensus COL1A1 sequence (Simon et al., 2001) [69]. Cancer Genetics and Cytogenetics 2003 140, 1-12DOI: (10.1016/S0165-4608(02)00848-8)