SUNY Downstate Medical Center

Slides:



Advertisements
Similar presentations
Design and Initial Testing of Imager for Simultaneous Bilateral Optical Mammography OSA Biomedical Optics Topical Meeting April th, 2004 Miami, Florida.
Advertisements

Physiological Variation in Vascular Reactivity of Breast Tissue over the Menstrual Cycle Demonstrated by Optical Tomography Katz MS1, Hardin RE1, Franco.
Breast Cancer. Introduction Most common female cancer Accounts for 32% of all female cancer 211,300 new cases yearly and rising 40,000 deaths yearly.
Temporal-Spectral Imaging of Functional States Randall L. Barbour NIRx Medical Technologies LLC SUNY Downstate Medical Center 4 th NIH Optical Imaging.
Presenter: Douglas S. Pfeil, Sergio A. Ramirez, Harry L. Graber, LeRone Simpson, Dimitre Stefanov, Tigran Gevorgyan, Joshua Burak, Vinay Tak, Wilson Ko,
Qianqian Fang, Stefan Carp, Mark Martino, Richard Moore, Daniel Kopans, David Boas Optics Division, Martinos Center for Biomedical Imaging, Massachusetts.
Breast Pathology Helge Stalsberg MD University Hospital of North Norway.
Derivation and Validation of Metrics for Breast Cancer Diagnosis from Diffuse Optical Tomography Imaging Data Randall L. Barbour, Ph.D. SUNY Downstate.
Medical Imaging Mohammad Dawood Department of Computer Science University of Münster Germany.
Development of Improved Noise Metrics and Auditory Risk Assessment Procedure June 22, 2009 Won Joon Song and Jay Kim Mechanical Engineering Department.
Breast Cancer 101 Barbara Lee Bass, MD, FACS Professor of Surgery
Validation of predictive regression models Ewout W. Steyerberg, PhD Clinical epidemiologist Frank E. Harrell, PhD Biostatistician.
AJCC TNM Staging 7th Edition Breast Case #3
Despeckle Filtering in Medical Ultrasound Imaging
Thoughts on Biomarker Discovery and Validation Karla Ballman, Ph.D. Division of Biostatistics October 29, 2007.
Measurement of liver blood flow using [ 15 O]H 2 O and PET Literature review 7 th Modelling Workshop in Turku PET Centre, 20 th October 2005 Turku PET.
BREAST CANCER.
Microwave Thermography
Shutter-Speed Model DCE-MRI for Assessment of Response to Cancer Therapy U01 CA154602; Wei Huang, PhD, Christopher Ryan, MD; Oregon Health & Science University,
Ovarian tumor Wei Jiang, M.D., Ph.D. Attending of Ob & Gyn Ob & Gyn Hospital, Fudan University 419 Fangxie Road, Shanghai -----From.
UOG Journal Club: January 2013
Bio-Economics Supply and Demand According to Chance.
Breast Pathology. Breast pathology Inflammatory Disorders Acute Mastitis Preiductal Mastitis Mammary Duct Ectasia Fat Necrosis Lymphocytic Mastopathy.
Jump to first page First pregnancy after age 30 (RR 1.48). BMI >29 (RR 1.48). Being a college graduate, independent of OB-GYN history (RR 1.36). (Collaborative.
Designing Efficient Cascaded Classifiers: Tradeoff between Accuracy and Cost Vikas Raykar Balaji Krishnapuram Shipeng Yu Siemens Healthcare KDD 2010 TexPoint.
Microwave Radiometry Microwave Radiometry. The RTM-01-RES radiometer receives and evaluates the natural electromagnetic radiation (temperature) from the.
Imaging examinations of breasts
Medical Image Analysis Dr. Mohammad Dawood Department of Computer Science University of Münster Germany.
Computational Diagnostics A new research group at the Max Planck Institute for molecular Genetics, Berlin.
Neuroimage Analysis Center An NCRR National Resource Center Time Series MRI Core Analysis, Modeling - toward Dynamic Surrogates.
Pathology.
Mammogram Analysis – Tumor classification - Geethapriya Raghavan.
BMI2 SS07 – Class 8 “Image Processing 2” Slide 1 Biomedical Imaging 2 Class 8 – Time Series Analysis (Pt. 2); Image Post-processing (Pt. 2) 03/20/07.
Effects of Grayscale Window/Level on Breast Lesion Detectability Jeffrey Johnson, PhD a John Nafziger, PhD a Elizabeth Krupinski, PhD b Hans Roehrig, PhD.
Date of download: 6/22/2016 Copyright © 2016 SPIE. All rights reserved. Schematic representation of the near-infrared (NIR) structured illumination instrument,
간담도 암에서의 PET 의 활용 핵의학과 홍일기. 18 F-FDG PET: Warburg effect.
Date of download: 6/29/2016 Copyright © 2016 SPIE. All rights reserved. The schematic of the rotational probe in noncontact diffuse correlation tomography.
Figure 1: a 32-year-old woman presented with RT breast mass, MRI showed false positive diagnosis of cancer. Dynamic contrast enhanced MRI, axial subtraction.
Date of download: 7/5/2016 Copyright © 2016 SPIE. All rights reserved. A typical stimulation sequence. Targeted end-tidal values of pCO2 and pO2 were 38.
DEMONSTRATION OF USING SPSS Logistic Regression Models for Prediction 2016/11/71.
IMAGE ANALYSIS AND SEGMENTATION OF ANATOMICAL FEATURES OF CERVIX UTERI IN COLOR SPACE Viara Van Raad STI – Medical Systems, 733 Bishop St, Makai Tower,
Correlation of tumor blood volume and apparent diffusion coefficient values with the prognostic parameters of head and neck squamous cell carcinoma Abdel.
Dr. Amit Gupta Associate Professor Dept Of Surgery
– р<0.05 between baseline
Pancreatic Tumors: Diagnostic Patterns by 3D Gradient-Echo Post Contrast Magnetic Resonance Imaging with Pathologic Correlation  Khaled M. Elsayes, MD,
Ari Brooks, MD Cancer Surgeon, Big Data End User
Dr Amit Gupta Associate Professor Dept Of Surgery
Part 5 - Chapter 17.
Contrast-enhanced Dedicated Breast CT: Initial Clinical Experience
Chapter 5 Tumor , neoplasm Department of pathology.
How many study subjects are required ? (Estimation of Sample size) By Dr.Shaik Shaffi Ahamed Associate Professor Dept. of Family & Community Medicine.
BREAST CANCER Walid Galal El Shazly
SON 2147 Sonography of the Breast
W. Scott Campbell, MBA, PhD University of Nebraska Medical Center
W. Scott Campbell, MBA, PhD University of Nebraska Medical Center
Limburg Clinical Research Program
Breast Imaging Ravi Adhikary, MD.
Current Status of Breast Ultrasound
Predicting Treatment Response of Breast Cancer to Neoadjuvant Chemotherapy Using Ultrasound-Guided Diffuse Optical Tomography  Wenxiang Zhi, Guangyu Liu,
Part 5 - Chapter 17.
Computational Diagnostics
Computational Neuroanatomy for Dummies
A Review in Quality Measures for Halftoned Images
Volume 148, Issue 1, Pages (January 2012)
GEMSTONE Educational Case Summary
CT images by texture analysis
Interaction When the incidence of a disease in the presence of two or more risk factors differs from the incidence rate expected to result from their individual.
Marion C.W. Henry, MD Yale University
Nazmus Saquib, PhD Head of Research Sulaiman AlRajhi Colleges
Machine learning analysis for predicting survival in stage III non-small cell lung cancer patients receiving definitive chemotherapy and proton radiation.
Presentation transcript:

SUNY Downstate Medical Center Derivation and Validation of Metrics for Breast Cancer Diagnosis from Diffuse Optical Tomography Imaging Data Randall L. Barbour, Ph.D. SUNY Downstate Medical Center Brooklyn, New York

Corrosion Cast of Tumor Vasculature Corrosion Cast of Tumor Vasculature. ‘tp’, = tumor periphery, ‘st’ = surrounding tissue. (M. Molls and P. Vaupel, Eds. Blood Perfusion and Microenvironment of Human Tumors: Implications for Clinical Radiooncology. Springer-Verlag, New York 2000.)

Basic Features of Tumor Vasculature Leaky vessels Increased interstitial pressure Poorly developed vessels altered/absence of normal control mechanisms Relative state of hypoxemia Dynamic optical studies should prove sensitive to multiple features of tumor biology.

Motivation For Dynamic Studies Functional Parameters Associated with Blood Delivery to Tissue Tissue Oxygen Demand Vascular Compliance Autoregulation (e.g., reactive hyperemia) Autonomic Control (modulation of blood delivery) Varying metabolic demand influences tissue-vascular coupling Response to provocation Influence of disease Effects of drugs Technical Benefits Multiple features High intrinsic contrast No need for injection Why Optical? Simultaneous assessment of metabolic demand and vascular dynamics.

Dual Breast Imaging Result -9.3e-9 2.1e-8 -1.2e-8 Left (tumor) 1 2 3 4 5 6 7 Right (healthy) D Hbred [mol/l] Imaging frames 1 2 3 4 5 6 7

Strategies for Data Analysis Time Series Measures Inherently information rich Large dimensional data sets. To Obtain Useful Information: Consider the big picture

Dual Breast Imager Approx. Breast Positions Phantom Spheres Gantry with Opening Fiberoptics Measuring Cup Adjusters (Tilt, Lift, Pitch/Yaw) Approx. Breast Positions

Instrumentation Measuring Heads Stepper Motor Controller Fiber optics 8 Power Supply Motor Controller (4,5)b (4,5)a 12 Detection Unit Stepper Motor Controller PC Fiber optics Measuring Heads

Approach Simple Idea: Define utility of scalar metrics of amplitude, variance and spatial coordination of low frequency hemodynamics obtained from baseline measures Amplitude response to a simple provocation Simultaneous Measures: Paired difference

Power Spectrum of Hb Signal

Dimension Reduction: Temporal Spatial Averaging Time Position (IV) Spatial map of temporal standard deviation (SD) (III) Baseline temporal mean is 0, by definition temporal integration drop position information sorted parameter value 100 Hbdeoxy Hboxy (II) spatial integration mean SD scalar quantities (I)

Spatial  Temporal Averaging Time Position (IV) spatial integration (II) (I) Time series of spatial mean → O2 demand / metabolic responsiveness Time series of spatial SD → Spatial heterogeneity temporal integration Temporal mean of spatial mean time series: 0, by definition Temporal SD of spatial mean time series Temporal mean of spatial SD time series Temporal SD of spatial SD time series scalar quantities

Method 2: Time-frequency (wavelet) analysis Starting point is reconstructed image time series (IV) Use (complex Morlet) wavelet transform as a time-domain bandpass filter operation Output is an image time series (IV) of amplitude vs. time vs. spatial position, for the frequency band of interest Filtered time series can be obtained for more than one frequency band Recompute previously considered, but starting with the wavelet amplitude time series time f1 f2

Vasomotor Coordination Healthy Breast Tumor Breast

Method 3: Provocation Analysis: Healthy Subject Left breast (blue curve) and right breast (red curve)

Provocation Analysis: Cancer case

Scalar Metrics Explored Experimental Condition Tumor-Associated Phenotype Scalar Metric Resting State Hypoxia Spatial Coordination Evoked Response Angiogenesis

Breast Pathology Status Subject Population Subject Group Breast Pathology Status N Age (yr) [mean ± SD] BMI (kg-m2) Tumor Size [largest dimension] Clinical Description Retrospective Active CA 14 47.9 ± 12.3 28.7 ± 5.3 10 ≤ 3 cm 4 > 3 cm 10 ductal carcinoma 1 ductal & lobular carcinoma 1 mucinous carcinoma 1 metastatic CA 1 inflammatory CA Prior CA 3 50.7 ± 9.4 30.4 ± 0.5 — All had lumpectomies 2-3 yr prior to NIRS study Pre-CA Non-CA Pathology 11 45.7 ± 5.6 28.7 ± 5.5 (N = 7) 3 fibrocystic disease 4 breast cyst 1 axillary cyst 2 benign breast lumps 1 breast reduction surgery No History of Breast Pathology 9 41.6 ± 10.0 30.3 ± 7.2

Subject Population Prospective Active CA 14 51.4 ± 10.9 30.4 ± 4.5 51.4 ± 10.9 30.4 ± 4.5 5 ≤ 3 cm 9 > 3 cm(a 13 ductal carcinoma 1 axillary adenocarcinoma with mammary duct ectasia and hyperplasia Prior CA 4 60.8 ± 9.3 25.5 ± 1.7 — 3 prior ductal carcinoma 1 prior mucinous carcinoma All had lumpectomies 2-6 yr prior to NIRS study Pre-CA 53.5 ± 3.4 29.0 ± 4.1 (N = 3) 2 DCIS 1 atypical ductal hyperplasia 1 extremely dense breasts Non-CA Pathology 6 43.7 ± 8.4 26.6 ± 4.9 (N = 4) 1 cystic disease 2 fibrocystic changes 1 fibrosis 1 benign breast lump 1 breast reduction surgery No History of Breast Pathology 8 44.0 ± 6.8 30.5 ± 8.9

Patient Demographics

Logistic Regression Applied Metrics calculated and selected based on t-tests & ROC curves Metrics used as inputs into logistic regression model Probability Logistic regression model calculates i for each metric (Xi) Using i, a predicted probability distribution can be created Metrics X1 = .43; X2 = -.05 New Patient’s Values New patient’s Xi used to generate probability of cancer in patient Linear Model: P(cancer) = 0.75 Logistic Regression: P(cancer) = 0.90

Scalar Metrics Examined

Multivariate Predictor Performance

Performance of Multivariate Predictor Averages (Two views of the same histogram.) (This one has the same orientation as the ones in Figures 2 and 3.) (This one is rotated 90°, so that all the bars are visible.)

Summary: The amplitude and spatial coordination of the Hb signal is notable altered in tumor bearing breasts. Multivariate metrics derived from simple scalar quantities derived from resting and provoked responses yield predictors having high discriminatory values.