Basic-Algorithms-of-Bioinformatics Applet

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Presentation transcript:

Basic-Algorithms-of-Bioinformatics Applet BABA Basic-Algorithms-of-Bioinformatics Applet

Why? Interactive demos helps a lot to understand a problem Very few interactive works available on the net only for simple dynamic programming limited parameters really ugly source code rarely available

Goals Make algorithms fully understandable and interactive: Simple Dynamic Programming Table Needleman & Wunsch Smith & Waterman Local Search Four Russians Easy to use Highlight the important aspects Let the user play with the parameters

Implementation Java 1.2 compatible Applet running on Browser (on the net) Applet viewer Swing + Graphics 2D: nice to see!

Basic layout for other DP algorithms Easy to extend! The four algorithms extends The basic graphic grid class The interface The algorithm execution model published under GPL

Let’s see some action!

Info ~ 8600 lines of code Basic Grid Basic DP Algorithm DP Grid NW Grid SW Grid FR Grid Basic DP Algorithm NW Algorithm SW Algorithm Four Russians Sweeeet BABA!