Bioinformatics for Research

Slides:

Advertisements

Similar presentations

Automatic functional transcriptomic annotation Bioinformatic school CIBA Manuel Ruiz (CIRAD) Alexis Dereeper (IRD) Marilyne Summo (CIRAD)

Advertisements

Beyond PubMed and BLAST: Exploring NCBI tools and databases Kate Bronstad David Flynn Alumni Medical Library.

Genome databases and webtools for genome analysis Become familiar with microbial genome databases Use some of the tools useful for analyzing genome Visit.

Integrating dbSNP with P. falciparum genome resources.

Annotating a Scarlet Runner Bean genome fragment put together by shotgun sequencing Scarlet Runner ean Max Bachour.

HCS806 “Methods in Horticulture and Crop Science” Introduction to methods in Bioinformatics for plant science. David Francis (Coordinator) Ian Holford.

Bioinformatics and the Engineering Library ASEE 2008 Amy Stout.

Bioinformatics for biomedicine Summary and conclusions. Further analysis of a favorite gene Lecture 8, Per Kraulis

 We had a brief introduction to Bioinformatics  Learned about DNA › DNA sequencing  ATGC or in RNA, the T becomes a ‘U’  Only some of the videos such.

B IOINFORMATICS S UMMER A CADEMY J UNE

MARCUS LYON Bioinformatics Workshop Why I’m Here Gain a better understanding of bioinformatics  Benefit my current/future research  Useful information.

Bioinformatics Workshop.  We started by discussing what bioinformatics is and how it is used  We learned that DNA is the information about an organism.

The BioPerl project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research.

Alignment of mRNAs to genomic DNA Sequence Martin Berglund Khanh Huy Bui Md. Asaduzzaman Jean-Luc Leblond.

Lecture 2.21 Retrieving Information: Using Entrez.

Genomic Database - Ensembl Ka-Lok Ng Department of Bioinformatics Asia University.

BI420 – Course information Web site: Instructor: Gabor Marth Teaching.

12ex.1. 12ex.2 The BioPerl project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science.

Asteraceae (Compositae) Genome Resources at NCBI GenBank.

Arabidopsis Gene Project GK-12 April Workshop Karolyn Giang and Dr. Mulligan.

Login: BITseminar Pass: BITseminar2011 Login: BITseminar Pass: BITseminar2011.

On line (DNA and amino acid) Sequence Information

 Lisa Federer, Research Informationist UCLA Louise M. Darling Biomedical Library.

Databases in Bioinformatics and Systems Biology Carsten O. Daub Omics Science Center RIKEN, Japan May 2008.

Sequence Databases What are they and why do we need them.

MCB 5472 Assignment #5: RBH Orthologs and PSI-BLAST February 19, 2014.

Bioinformatics Overview, NCBI & GenBank JanPlan 2012.

Molecular Biology Primer. Starting 19 th century… Cellular biology: Cell as a fundamental building block 1850s+: ``DNA’’ was discovered by Friedrich Miescher.

Genome databases and webtools for genome analysis Become familiar with microbial genome databases Use some of the tools useful for analyzing genome Visit.

جلسه اول بیو انفورماتیک گردآوری:مسعود رسول آبادی

Next Generation Sequencing pipeline: a joint LONI – BIRN [UCLA – UCI] collaborative project F. Macciardi – March 16, 2011.

Gramene Objectives Provide researchers working on grasses and plants in general with a bird’s eye view of the grass genomes and their organization. Work.

Bioinformatics Scheme of the sequencing project (Martínez & Figueras, 2007) Construction Bookseller Bases determination Fragments assembly Gene search.

BIOLOGICAL DATABASES. BIOLOGICAL DATA Bioinformatics is the science of Storing, Extracting, Organizing, Analyzing, and Interpreting information in biological.

Bioinformatics Lecture to accompany BLAST/ORF finder activity

What is BLAST? Basic BLAST search What is BLAST?

Work Presentation Novel RNA genes in A. thaliana Gaurav Moghe Oct, 2008-Nov, 2008.

Lecture 1.01 Developing the Tools Montreal 2004 Course Introduction John J. Salama.

Bioinformatics Shared Resource Bioinformatics : How to… Bioinformatics Shared Resource Kutbuddin Doctor, PhD.

Introducing Bioinformatics Using the Nitrogen Cycle Alyssa Bumbaugh Ron Peck Mark Radosevich.

What is BLAST? Basic BLAST search What is BLAST?

Research Paper on BioInformatics

Modules and BioPerl.

Basics of BLAST Basic BLAST Search - What is BLAST?

Genome Sequence Annotation Server

JMC CGEMS SUMMER GENOMICS TRAINING WORKSHOPS

Bioinformatics Madina Bazarova. What is Bioinformatics? Bioinformatics is marriage between biology and computer. It is the use of computers for the acquisition,

Fall 2016 HORT6033 Molecular Plant Breeding

생물정보학 Bioinformatics.

Pairwise and NGS read alignment

Genome Sequence Annotation Server

Saccharomyces Genome Database (SGD)

Introduction to Genetic Analysis

Access to Sequence Data and Related Information

Strategies for annotation of a genome

KEY CONCEPT Entire genomes are sequenced, studied, and compared.

Meatgenome Analysis Project Bioinformatics 301

A web-based platform for structural and functional annotation of model and non-model organisms Jodi Humann, Taein Lee, Stephen Ficklin,

Figure 3 Stepwise strategy of bioinformatic analysis of sequencing results We obtained 7,292,715 and 303,698 DNA sequence reads from the affected brain.

Follow-up from last night: XSEDE credits

Evolution of Genomes Chapter 21.

Gene Safari (Biological Databases)

KEY CONCEPT Entire genomes are sequenced, studied, and compared.

Key CottonGen Features For more information contact:

Introduction to Bioinformatics

KEY CONCEPT Entire genomes are sequenced, studied, and compared.

SUBMITTED BY: DEEPTI SHARMA BIOLOGICAL DATABASE AND SEQUENCE ANALYSIS.

For more information contact:

Presentation transcript:

Bioinformatics for Research www.bioinfo.wsu.edu/teaching ATCGTAGGCTAGCCTATG Gigabytes of NGS data Publishable results ? Next-gen sequencing data getting you down? Does it seem like the analysis programs are in a mystical language? Don’t know what the results really mean? THIS CLASS IS FOR YOU!!! Learn about: Basic nucleotide and protein alignments Introductory Unix/Linux and perl basics How to use Unix/Linux and web-based BLAST Genome assembly Annotation of genomes RNA-Seq analysis (CLC/Trinity) GBS analysis (STACKs/Tassel) Submitting data to NCBI Genbank Spring 2017--HORT 550, 4 credits Lecture: Tu, Th 1200-1315 Lab: F 1310-1600 Students must have a laptop for class Questions? Contact Dorrie Main, dorrie@wsu.edu