(a) (b) Up-regulated in R Down-regulated in R Up-regulated in S

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(a) (b) Up-regulated in R Down-regulated in R Up-regulated in S Number of contigs Up-regulated in S Down-regulated in S Number of contigs (b) Up-regulated Down-regulated Number of contigs Fig. S4. (a) Number of contigs up-regulated (left) or down-regulated (right) in the resistant pool (top) or in the sensitive pool (bottom) after herbicide application compared to the respective UT experimental modalities. (b) Number of contigs up-regulated (top) or down-regulated (bottom) exclusively in the sensitive pool, exclusively in the resistant pool or in both pools after herbicide application compared to the respective UT modalities.