Testing for Parvovirus B19 - Broadening the Assay to Cover Variants

Slides:



Advertisements
Similar presentations
Number of specimens tested
Advertisements

Marta José, Instituto Grifols S.A., Barcelona, SPAIN
National Institute for Biological Standards and Control Assuring the quality of biological medicines Proposal for a Hepatitis A genotype panel Rob Anderson.
Utilizing a Non-Commercial Real- Time PCR to Detect HIV-1 RNA in HIV Antibody Negative Diagnostic Sera Submitted to The Maryland Public Health Laboratory.
Pediatric Diagnosis of HIV-1 Infection Using Dried Blood Spots Chin-Yih Ou, PhD NCHSTP/DHAP Centers for Disease Control and Prevention.
REAL TIME PCR ………A step forward in medicine
DNA was extracted from whole blood using 3 extraction instruments: Radius (Protedyne, Windsor, CT) and MagNA Pure (Roche Applied Science, Indianapolis,
Yi-Chen Yang, Drug Biology Division Bureau of Food and Drug Analysis Department of Health, Taiwan Collaborative study for establishment of the first national.
Karen Cristiano Biologicals Unit, CRIVIB Calibration against the WHO Standards of National Reference Preparations for detection of blood viruses by NAT:
Evaluation of Cloned DNA for B19 Genotypes Dr Jacqueline Fryer, Division of Virology NIBSC.
What Can You Do With qPCR?
Full characterization of HAV RNA window period positive blood donations in Germany SoGAT XVIII Bethesda.
COBAS AmpliPrep/Cobas TaqMan HIV-1 Test
Detection of parvovirus B19 and novel human parvoviruses in high-risk individuals Ashleigh Manning 1, Kate Templeton 2, Ed. Gomperts 3, Peter Simmonds.
Update on CBER HIV NAT panels and International panels Indira Hewlett, Ph.D Chief, Lab. of Molecular Virology DETTD/OBRR/FDA May 28, 2009 XXI SoGAT meeting.
FDA’s Current Considerations of Parvovirus B19 Nucleic Acid Testing (NAT) Mei-ying W. Yu, PhD Division of Hematology CBER/FDA Extraordinary SoGAT Meeting.
Background  The soft shell clam, Mya arenaria, currently occupies a large geographical range in the northern hemisphere.  Soft shell clams are found.
Proof of Principle for the Non-Invasive Prenatal Diagnosis of Fetal Trisomy 21 Sarah Fielding NE Thames Regional Genetics Service.
Investigating the use of Multiple Displacement Amplification (MDA) to amplify nanogram quantities of DNA to use for downstream mutation screening by sequencing.
Persistent human erythrovirus infection in blood donors National Blood Service, UK Div. Transfusion Medicine, University of Cambridge, UK Public Health.
Commercial Assays and Detection of Parvovirus B19 genotypes Dr Sally A. Baylis, Division of Virology NIBSC.
Parvovirus B19 Genotype 2 Plasma, Sourced from the US Dr Sally A. Baylis, Division of Virology NIBSC.
Stability of HCV, HIV-1 and HBV nucleic acids in plasma samples stored at different temperatures Marta José, Rodrigo Gajardo and Juan I. Jorquera Instituto.
Sheila Negrini Parmezan São Paulo, Introduction The neuraminidase inhibitors (NAIs), oseltamivir and zanamivir, are currently the antiviral drugs.
HCV PCR By Henrietta Orji July 31 st, 2010 Hepatitis C Virus by Polymerase Chain Reaction.
Molecular Techniques in Microbiology These include 9 techniques (1) Standard polymerase chain reaction Kary Mullis invented the PCR in 1983 (USA)Kary.
Identification, persistence and serological cross-reactivity of B19 genotype 2 Kati Hokynar, MSc Haartman-institute, Dept. of virology University of Helsinki.
SoGAT 2005 Donor screening for parvovirus B19 antibodies: Reducing or eliminating the risk of transmission SoGAT 2005 Gordon Elliott Biotrin 93 The Rise.
Preparation of HBV DNA reference standards and the experience of HBV NAT in Taiwan Dr. Hwei-Fang Cheng Department of Health, Taiwan.
NIBSC 2 March 2007 The European Directorate for the Quality of Medicines and Health Care issues of concern regarding the detection of B19 in blood:plasma.
Ro / BSD Hessen Institut für Transfusionsmedizin SoGAT XVII, Paris, Paris 2004 B19 Overview of Testing for Blood Banks W. Kurt Roth Red Cross Blood Transfusion.
Human Parvoviruses Kevin E Brown Immunisation and Diagnosis Unit Virus Reference Department Centre for Infections.
Genotype analysis of anti-B19 IgM positive sera from Brazil Kevin E Brown Immunisation and Diagnosis Unit Virus Reference Department Centre for Infections.
Factor V Leiden Detection and Genotyping
Novel and Related Variant Parvoviruses in Human Plasma Jacqueline Fryer and Sally Baylis National Institute for Biological Standards and Control Eric Delwart.
Detection of Parvovirus B19 Variants in Factor VIII Concentrates Mei-ying W. Yu 1, Yansheng Geng 1, Susan Wong 2, Kevin Brown 3 ; 1 CBER/FDA, U.S.A.; 2.
HRM REAL TIME PCR Presented by: Dadkhah Fahimeh SNP genotyping by HRM REAL TIME PCR.
The Factor II (Prothrombin) G20210A Detection and Genotyping
SOGAT Presence (absence) of genotype 2 and 3 Erythrovirus DNA in manufacturing plasma Theo Cuypers, Marco Koppelman, Margret Sjerps, Henk Reesink.
Dawit Assefa Ethiopia Health and Nutrition Research Institute Dawit Assefa Ethiopia Health and Nutrition Research Institute Evaluation of an in-house HIV.
Hepatitis C Molecular Diagnosis in the Era of DAAs July 22, 2016, Tehran Ali Namvar Ph.D of Molecular Genetics Iranian Comprehensive Hemophilia Care Center.
Chief, Laboratory of Molecular Virology, CBER, FDA
QUANTITATIVE ANALYSIS OF AFRICAN SWINE FEVER VIRUS BY DIGITAL PCR
Experience in Testing of Genotypes of B19
Human Parvovirus PARV4 in Blood and Plasma Products
GRIFOLS PLASMA: genotype 2 vB19 sample
Harvey Holmes, Clare Morris and Neil Berry Division of Retrovirology
Israel maritime college
Evaluation of the Epstein-Barr Virus R-Gene Quantification Kit in Whole Blood with Different Extraction Methods and PCR Platforms  Samira Fafi-Kremer,
Using Galaxy for Molecular Assay Design
Title Detection of HLA-B*58:01 with TaqMan assay and its association with allopurinol-induced sCADR.
Dual detection of Legionella pneumophila and Legionella species by real-time PCR targeting the 23S-5S rRNA gene spacer region  G. Yang, R. Benson, T.
Volume 10, Issue 4, Pages (April 1999)
Evaluation of Candidate Standard XX (97/650)
1st International Standard for HIV-1 RNA NIBSC Code 97/656
Rapid diagnosis of human brucellosis by SYBR Green I-based real-time PCR assay and melting curve analysis in serum samples  M.I. Queipo-Ortuño, J.D. Colmenero,
Distributions of parvovirus B19 genotype 1-3 in blood donations
E. Galmozzi, F. Facchetti, R. Perbellini, A. Aghemo 
SoGAT Meeting, Berne, 14 June 2006 M. Nübling (PEI, Germany)
Identification of novel parvovirus B19 variants
A Consensus on Fungal Polymerase Chain Reaction Diagnosis?
Comparison of a commercial and ‘in house’ assay for B19 DNA
Evaluation of a single-tube real-time PCR for detection and identification of 11 dermatophyte species in clinical material  A.M.C. Bergmans, M. van der.
M. Ylihärsilä, E. Harju, R. Arppe, L. Hattara, J. Hölsä, P
Sally Baylis, Piotr Grabarczyk & Jacqueline Fryer
A Consensus on Fungal Polymerase Chain Reaction Diagnosis?
Volume 116, Issue 3, Pages (March 1999)
Rapid pathogen-specific phenotypic antibiotic susceptibility testing using digital LAMP quantification in clinical samples by Nathan G. Schoepp, Travis.
Rapid Detection of HIV-1 subtype C Integrase resistance mutations by the Use of High-Resolution Melting Analysis Tendai Washaya BSc, Msc. Pre-PhD Student.
Schematic representation of the HPV genome, highlighting the regions important in PCR-based HPV analysis. Schematic representation of the HPV genome, highlighting.
Presentation transcript:

Testing for Parvovirus B19 - Broadening the Assay to Cover Variants Sally Baylis, NIBSC SoGAT XVII

Screening Plasma Pools for Parvovirus B19 - an OMCL Perspective European Pharmacopoeia Monographs: “Human anti-D immunoglobulin” & “Human anti-D immunoglobulin for intravenous administration” (Jan. 2004) “Human plasma (pooled and treated for virus inactivation)” (July 2004) Plasma pools should contain not more than 104 IU/ml parvovirus B19 DNA

Variant Erythroviruses V9 isolated from a child with transient aplastic crisis (Nguyen et al., 1998, 1999) LaLi, K71 dermal isolates (Hokynar et al., 2002) A6 isolated from an anaemic HIV-positive patient (Nguyen et al., 2002) D91.1 isolated from a child with transient aplastic crisis (Servant et al., 2002) Classification proposed by Servant et al., (2002) based upon sequence analysis of the NS1/VP1 region

Genetic Diversity of Erythroviruses: Analysis of the NS1/VP1 Region Servant et al., J. Virol., 2002

Roche Parvovirus B19 Quantification Kit - Genotype 1 Fluorescence (F2/Back Fluorescence (F1/F2) Genotype 2 NTC Genotype 3 M 1 1 3 3 2 2 NTC M Cycle Number Cycle Number Region amplified: NS1

Artus RealArtTM Parvo B19 LC Kit Cycle Number Fluorescence (F2/Back - F1) Genotype 3 Genotype 2 Genotype 1 NTC M 1 1 3 3 2 2 NTC M Region amplified: VP1

Sensitivity of Detection of Different Erythrovirus Genotypes

In-house Erythrovirus TaqMan Assay Consensus assay, primers & probe directed to the NS1 gene Manufacturing plasma pools (Europe, North America) Extraction using the MagNA Pure (Total Nucleic Acid, large volume) & real-time PCR on the LightCycler Standard curve – WHO International Standard for parvovirus B19 (99/800)

In-house Erythrovirus TaqMan Assay Genotype 3 Genotype 2 Genotype 1 Fluorescence (F1/F2) NTC Cycle Number NTC Genotype 1 Genotype 3 Genotype 2 Temperature º C Fluorescence – d(F1)/ dT

Conclusions The commercial assays have limitations in the detection and quantification of the variant erythroviruses Of 58 plasma pools screened with the Roche & in-house TaqMan assays, results for parvovirus B19 are in agreement No evidence currently for the presence of variant erythroviruses in manufacturing pools examined by NIBSC

Discussion Primer & probe design affects ability to detect and quantify variant viruses Compliance with EP threshold concentration of 104 IU/ml may be compromised Clinical significance, prevalence & geographical distribution of erythrovirus variants is still largely unknown What are the implications in detecting a pools with high titres of a variant erythrovirus?

Acknowledgements Kevin Brown, NIH Daniel Candotti & Jean-Pierre Allain, Cambridge Kati Hokynar & Klaus Hedman, University of Helsinki Annabelle Servant & Antoine Garbarg-Chenon, Paris