Sequence analysis Introduction

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Presentation transcript:

Sequence analysis Introduction “Bioinformatics: Computer Methods in Molecular Biology” June 26-30, 2017, Trieste, Italy Sequence analysis Introduction Leonardo Mariño-Ramírez - Roberto Vera Alvarez NCBI, NIH – Bethesda, USA

Course computer infrastructure External resources (remote HPC systems) ICGEB Network Google Cloud Platform (Beowulf Virtual Cluster) Technical University, Graz, Austria User computers

ICGEB Network It is a 100/1000 MB/s network connecting several physical/virtualized servers and more than 200 workstations (Macs and PCs) The ICGEB LAN it is connected to Internet by Italian Academic Network GARR-X

ICGEB WLAN ICGEB Computer Unit extended ICGEB Wireless LAN (WLAN) to this course room Only two client wireless device, at a time, can be connected, the accounts provided should not be shared between different users

ICGEB WIRELESS CREDENTIALS

Google cloud infrastructure is provided by Pázmány Péter University, Budapest, Hungary

Thanks Roberto! Roberto Vera Alvarez, NCBI

Cluster data & software Global file system (Linux NFS): /gfs/progs for Bioinformatics programs /gfs/data for public and global data (databases) /home/user# User's space (HOME) Cluster Monitoring Tools http://head/torque shows the users and jobs running http://head/ganglia shows the cluster status

Let's get started! Click on “Course requirements” net.icgeb.org/course/2017 Click on “Course requirements” Follow the links to install all programs from the list

Have a nice course!!!!