Microarray Laboratory

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© 2009 NHS National Genetics Education and Development CentreGenetics and Genomics for Healthcare This PowerPoint file contains.
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Presentation transcript:

Microarray Laboratory The Microarray Laboratory is the only NYS-certified clinical lab in the area that provides genetic testing in relation to prenatal, postnatal and cancer patients. What is microarray : Testing patient DNA against control DNA to identify pathogenic microduplications and/or microdeletions in the patient’s genome. Our Hours and TAT: 7.30am – 5.30pm M-F Normal : 14 business days Normal STAT : 7 business days Abnormal : 28 business days Abnormal STAT : 21 business days What we need: A minimum of 1ml peripheral blood or bone marrow in EDTA at room temp. POC Tissue or cultured cells from tissue, CVS or AF which the Cytogenetics laboratory cultures for us. FFPE sections are also accepted. What is involved: Extraction of 1 DNA – about 1.5 hours DNA prepared for microarray chip – about 8 hours *4 patients are needed per microarray chip Hybridization of DNA on chip – 40 hours Analysis of patients – about 1 day Confirmatory testing – 2 – 4 weeks Final review & sign out – about 0.5 day Why it’s ordered: Constitutional Cases: An abnormal prenatal screen, congenital anomalies, developmental delay or unknown clinical diagnosis in children. Cancer Cases: MDS, Cytopenia and other cancer types When it’s ordered: Clinicians and genetic counselors send us samples to rule out genomic abnormalities Who we are: A Laboratory Director, an Assistant Professor, and five NYS certified Medical Technologists. What’s the outcome: Provide patients and families answers and a direction for treatment. The following two figures have normal karyotypes. Figure A is an example of normal genome. Figure B exhibits Uniparental Disomy (UPD) with the utilization of SNP analysis. Platform used: 4X180K SNP+CGH by Agilent Technologies. Other things we do: Clean up for Earth Day, supported fund raising for Golisano Children’s Hospital. Where we’re located: Ridgeland Road Microduplication Microdeletion A - Normal B - UPD