Proteomic, Metabolomic and Lipidomic Research Capability at ICH and ION UCL Metabolomics.

Slides:



Advertisements
Similar presentations
Genomes and Proteomes genome: complete set of genetic information in organism gene sequence contains recipe for making proteins (genotype) proteome: complete.
Advertisements

Gas Chromatography, GC L.O.:  Explain the term: retention time.  Interpret gas chromatograms in terms of retention times and the approximate proportions.
Using Skyline to Monitor Long- Term Performance Metrics of High-Resolution Mass Spectrometers J. Will Thompson and M. Arthur Moseley Duke Proteomics Core.
Improvements in Mass Spectrometry for Life Science Research – Does Agilent Have the Answer? Ashley Sage PhD.
The Proteomics Core at Wayne State University
Mass spectrometry in organic chemistry
Pesticide screening LC-QTOF, Agilent. National Food Institute, Technical University of Denmark Disposition National Food Institute –EURL –NRL –Personale.
Mass Spectrometry Courtesy Purpose of Mass Spectrometry  Produces spectra of masses from the molecules in a sample of material, and.
Proposal for a Standard Representation of the Results of GC-MS Analysis: A Module for ArMet Helen Fuell 1, Manfred Beckmann 2, John Draper 2, Oliver Fiehn.
The Golden Age of Biology DNA -> RNA -> Proteins -> Metabolites Genomics Technologies MECHANISMS OF LIFE Health Care Diagnostics Medicines Animal Products.
Metabolomics DNA RNA Protein Biochemicals (Metabolites) Genomics – 25,000 Genes Transcriptomics – 100,000 Transcripts Metabolomics – 2,800 Compounds Proteomics.
KHS ChemistryUnit 3.4 Structural Analysis1 Structural Analysis 1 Adv Higher Unit 3 Topic 4 Gordon Watson Chemistry Department, Kelso High School.
Proteomic, Metabolomic and Lipidomic Research Capability at ICH and ION UCL Label Free Quantitative Proteomics “biomarker discovery”
Proteomic, Metabolomic and Lipidomic Research Capability at ICH and ION UCL Lipidomics.
HOW MASS SPECTROMETRY CAN IMPROVE YOUR RESEARCH
Evaluated Reference MS/MS Spectra Libraries Current and Future NIST Programs.
Tryptic digestion Proteomics Workflow for Gel-based and LC-coupled Mass Spectrometry Protein or peptide pre-fractionation is a prerequisite for the reduction.
Chapter 9 Mass Spectrometry (MS) -Microbial Functional Genomics 조광평 CBBL.
2007 GeneSpring MS GeneSpring for Metabolite BioMarker Analysis using Mass Spectrometry data Agilent Q-TOF VIP Visit Jan 16-17, 2007 Santa Clara, CA Thon.
1 Ion Information and Elemental Patterns Chapter 6 (Hoffmann & Stroobant) Chapter 1 (Johnstone and Rose, 1996)
© 2010 SRI International - Company Confidential and Proprietary Information Quantitative Proteomics: Approaches and Current Capabilities Pathway Tools.
"Omics", Whole Genomes, Mutations and Other Databases.
Analysis of Complex Proteomic Datasets Using Scaffold Free Scaffold Viewer can be downloaded at:
A Comprehensive Comparison of the de novo Sequencing Accuracies of PEAKS, BioAnalyst and PLGS Bin Ma 1 ; Amanda Doherty-Kirby 1 ; Aaron Booy 2 ; Bob Olafson.
Untargeted Metabolomics: Tandem LC-MSMS. Column and Flow Rate Selection Insert Barnes table for flow rates and sensitivity gain. Reverse Phase and Normal.
Menu A gaseous sample compound is injected into the mass spectrometer.
Finnish Custom Lab., Pekka Ravio
AS 2.12 Mass spectra a. interpret fragment ion peaks in the mass spectra of simple organic compounds, eg the difference between propanal and propanone.
Combined techniques problems L.O.:  Analyse absorptions in an infrared spectrum to identify the presence of functional groups in an organic compound.
Metabolomics and analytical chemistry: GC & GCMS Simone Bossi Analytical Chemistry Lab – Plant Physiology – Plant Biology.
Overview of Mass Spectrometry
Section 6.1 Atoms and Moles 1.To understand the concept of average mass 2.To learn how counting can be done by weighing 3.To understand atomic mass and.
State that the mobile phase may be a liquid or a gas.
Reference Information Unless otherwise noted, all mass spectral data was obtained from: National Institute of Standards and Technology (NIST) Standard.
Metabolomics MS and Data Analysis PCB 5530 Tom Niehaus Fall 2015.
The Molecular Formula Chemistry 11 Ms. McGrath. The Molecular Formula The empirical formula CH has a molar mass of 13 g/mol. Acetylene, C 2 H 2, and benzene,
Molecular Formula. Compare mass of empirical formula to formula mass of molecule X (empirical formula) = (molecular formula)‏
Material Measurement Lab Material Measurement Laboratory Mass Spectrometry Data Center Biomolecular Measurement Division Q. Dong; M. Lorna A. De Leoz;
Computational Challenges in Metabolomics (Part 1)
Mass Spectrometry  Determine the Molecular Mass of organic compounds.  Determine the Molecular Formula of organic compounds.  Sometime identified the.
Data independent acquisition methods for metabolomics Stephen Tate, Ron Bonner AB SCIEX, 71 Four Valley Drive, Concord, ON, L4K 4V8 Canada A high resolution.
RANIA MOHAMED EL-SHARKAWY Lecturer of clinical chemistry Medical Research Institute, Alexandria University MEDICAL RESEARCH INSTITUTE– ALEXANDRIA UNIVERSITY.
Date of download: 6/24/2016 Copyright © The American College of Cardiology. All rights reserved. From: Proteomic Strategies in the Search of New Biomarkers.
MASS SPECTROSCOPY (with Gas Chromatography). 5 Stages of the process – where do they happen? 1.Sample vaporised 2.Sample ionised 3.Ions accelerated 4.Ions.
MS Libraries for Forensics: DART-MS and GC-MS
Post translational modification n- acetylation Peptide Mass Fingerprinting (PMF) is an analytical technique for identifying unknown protein. Proteins to.
Metabolomics Data Analysis
Accelerating Research in Life Sciences
The Molecular Formula Chemistry 11 Ms. McGrath.
Ivana Blaženović Postdoctoral Researcher
Metabolomics Part 2 Mass Spectrometry
C2.8 Instrumental Analysis
Mass Spectrometry Courtesy
Empirical and Molecular Formulas
Mass Spectrometry Courtesy
Metabolomics: Preanalytical Variables
Nat. Rev. Nephrol. doi: /nrneph
Unit 3.4 Structural Analysis
Flowchart of approaches employed to putatively annotate PMSs secreted from oral bacteria. Flowchart of approaches employed to putatively annotate PMSs.
Week 13 Analyse absorptions in an infrared spectrum to identify the presence of functional groups in an organic compound. Analyse molecular ion peaks and.
Empirical Formulas  What do all of these formulas have in common? CH C2H2C2H2 C3H3C3H3 C4H4C4H4  Empirical Formula-Reduced version of the molecular formula.
Overview of the analytical workflow used in this study and a representative MS/MS spectrum.a, Overview of the analytical workflow used in this study. Overview.
Shotgun Proteomics in Neuroscience
Compound is first vaporized and converted into ions, which are then separated and detected. Electron Impact (EI) Mass Spectrometry 1.
Schematics for nutrient pulse systems
General schematic for MS analysis of ionized microbiological isolates and clinical material. General schematic for MS analysis of ionized microbiological.
Skyline for Small Molecules, a Sneak Peek at Emerging Capabilities
Presentation transcript:

Proteomic, Metabolomic and Lipidomic Research Capability at ICH and ION UCL Metabolomics

UCL Same principle as the proteomic mass spectral method Proteomic, Metabolomic and Lipidomic Research Capability at ICH and ION UCL Same principle as the proteomic mass spectral method Urine/plasma/CSF injected into a UPLC QTOF mass spectrometer  metabolites separated by chromatography  Masses of metabolites are ‘weighed’ with very high mass accuracy and then their empirical formula determined from this mass  PCA / MVA performed to identify compounds differentially expressed (up/down)  Masses are manually searched against on-line databases, potential identities narrowed down by analysis of fragmentation spectra

UCL Metabolomic analyses of CSF from PD & controls Proteomic, Metabolomic and Lipidomic Research Capability at ICH and ION UCL Metabolomic analyses of CSF from PD & controls Metabolomic analyses of CSF from LBD & controls Metabolomic analyses of CSF from LBD & PD