Experimental Evidence of a Spontaneous Condensation of Amino Acids

Slides:



Advertisements
Similar presentations
A guide for GCSE students KNOCKHARDY PUBLISHING
Advertisements

Paper and Thin layer Chromatography
In carbon-13 NMR, what do the number of peaks represent?
Chromatography Russian scientist Tswett in 1906 used a glass columns packed with finely divided CaCO3 to separate plant pigments extracted by hexane. The.
Chapter 10 Organic Chemistry
State of water molecules and silanol groups in Opal minerals: A near infrared spectroscopic study of opals from Slovakia Miroslav Bobon 1, Alfred A. Christy.
Nuclear Magnetic Resonance Spectroscopy. The Use of NMR Spectroscopy Used to map carbon-hydrogen framework of molecules Most helpful spectroscopic technique.
Answer all questions fully in your exercise books 1)What causes the colour change seen in the reducing sugars test? 2)Why is vitamin K2 important and how.
The Chemistry of Carbon
Human Biochemistry DP Chemistry Option B R. Slider.
Chemistry & Biochemistry
CARBON COMPOUNDS The Chemistry of Life. OBJECTIVES Define organic compound and name three elements often found in organic compounds. Explain why Carbon.
Carbon and the Molecular Diversity of Life.   The Properties of Carbon that make it so important You Must Know.
Chapter 3 Nuclear Magnetic Resonance Spectroscopy Many atomic nuclei have the property of nuclear spin. When placed between the poles of a magnet, the.
The Chemistry of Carbon BUILDING BLOCKS OF LIFE Why study Carbon? All life (on our planet) is carbon-based Cells ◦~72% H 2 O ◦~25% carbon compounds ◦Carbohydrates.
Units of Unsaturation This is also called “Degrees of Unsaturation” or “Double Bond Equivalents (DBE)”. By looking at a molecular formula, it is possible.
Polymer Molecule made of many monomers bonded together
Amino Acids, Isomerism and Condensation Polymers.
Sectional/Themed Revision Attempt the following and make additional more general notes as appropriate. The specification is a useful source of information.
What can you remember from last lesson? 1.Suggest how pentan-1-ol and pentan-3- ol could be distinguished from their carbon-13 nmr spectra. 2.Suggest how.
Spectroscopy Chemistry 3.2: Demonstrate understanding of spectroscopic data in chemistry (AS 91388)
Biochemistry. Compounds  Compounds are made up of atoms of two more elements in fixed proportions  Held together by chemical bonds Covalent Ionic.
Polyamides are polymers that contain many amide groups. These groups form when a carboxylic acid reacts with an amine.
Organic Analysis Basic concepts. Elements and Atoms Fundamental building block of all substances is the element. Fundamental building block of all substances.
The analysis of essential oils contained in the different sage (Salvia L.) species by means of TLC/densitometry M. Sajewicz 1, Ł. Wojtal 1, D. Staszek.
SPONTANEOUSE OSCILLATORY REACTION OF PROTEIN AMINO ACIDS IN ABIOTIC SYSTEM – LC-MS RESULTS Anna Maciejowska, Agnieszka Godziek, Mieczysław Sajewicz, Teresa.
Chapter 13 Nuclear Magnetic Resonance Spectroscopy Jo Blackburn Richland College, Dallas, TX Dallas County Community College District  2003,  Prentice.
Introduction to NMR Spectroscopy
THIN LAYER CHROMATOGRAPHY.
Proteins. Chemical composition of the proteins. Properties of α- amino carboxylic acids.
Part I – Introduction; Carbohydrates; Lipids
Proteins. Chemical composition of the proteins
Tracing peptidization in the equichiral and inequichiral α-amino acid solutions with aid of turbidimetry and the circular dichroism (CD) A. Godzieka, A.
DRUG DESIGN: OPTIMIZING TARGET INTERACTIONS
HIGH-PERFORMANCE LIQUID CHROMATOGRAPHIC EXPERIMENT
Chapter 2 The Chemistry of Life
Performance of the Chiral TLC in Physicochemical Studies An Episode
Performance of the chiral TLC in physicochemical studies
Chapter 4 – Carbon and Molecular Diversity of Life
Spontaneous condensation of amino acids in binary mixtures
M. Sajewicz1, M. Dolnik2, M. Matlengiewicz1, T. Kowalska1, and I. R
BIOCHEMISTRY.
Investigation of the peptide nanofibers and nanospheres formation by chromatographic and microscopic techniques   Agnieszka.
and Hydroxy Acids in Aqueous Ethanol
Proteins (b) (a) Structural formula (a) and space-filling model (b) of a short segment of a protein molecule. In the structural formula, hydrocarbon side.
Lab 1 General protein color tests
Figure 1. Phenethylamine 1H FT-NMR Spectrum in CDCl3 at 400 MHz.
M. Sajewicz1, M. Leda2, M. Gontarska1, D. Kronenbach1, E. Berry1, I. R
Biochemistry lab 4 (Proteins)
Reactions of alkenes and alcohols
Qualitative tests of protein
Synthesis and Analysis of Aspirin
Functional Groups In an organic molecule, a functional group is an atom or group of atoms that always reacts in a certain way. Section 22-1.
Assignment marking criteria
Color Test For Proteins And Amino Acids.
Definitions *Amino Acids (a.a):
High molecular weight poly (L-(+)-lactic acid)s are generally prepared by ROP of cyclic dimer, L-lactide, which is a crystalline solid. This involves conversion.
Carbon Chemistry Vocabulary Review
Introduction to C-13 NMR Dr. A. G. Nikalje Dept
NMR Spectroscopy of Epoxides
Organic Chemistry and the Importance of Carbon
Alpha Substitution Alpha substitution is the substitution of one of the hydrogens attached to the a carbon for an electrophile. The reaction occurs through.
Introduction to NMR Spectroscopy
Understanding solution
Color Test For Proteins And Amino Acids.
Introduction to NMR Spectroscopy
Chemistry of Life…continued
Introduction to NMR Spectroscopy
Presentation transcript:

Experimental Evidence of a Spontaneous Condensation of Amino Acids and Hydroxy Acids in Aqueous Ethanol Mieczysław Sajewicz, Dorota Kronenbach, Monika Gontarska, Teresa Kowalska Institute of Chemistry, University of Silesia, Katowice, Poland INTRODUCTION It is generally believed that condensation of amino acids and hydroxy acids (resulting in peptides and poly(hydroxy acids), respectively), and also of profens is rather difficult because energetically unfavourable, as it needs a considerable energetic input in order to split one water molecule from each pair of binding compounds [1]. This conviction affects many present-day presumptions regarding, e.g., prebiotic condensation of amino acids resulting in formation of peptides coupled through peptide bonds (NH-C=O). Hence, the experiments are still devised which involve ion irradiation of amino acid solutions to imitate the presumable prebiotic conditions of peptide formation [2]. Moreover, computational simulations are carried out to prove that energetically, polycondensation of amino acids (and hydroxy acids) would be more favourable, if carbon, oxygen, and/or nitrogen atoms in amino acid and hydroxy acid molecules were replaced by their respective analogues, i.e., silicon, sulphur, and phosphorus atoms [3]. AIM In this study, an experimental evidence is provided to prove that condensation with certain low-molecular-weight profens, amino acids and hydroxy acids carried out at ambient temperature can be effortless, if it is carried out in aqueous ethanol (with predominant proportion of alcohol), or in the course of chromatographic procedure on microporous surface of silica gel, evidently due to dehydrating properties of both, ethanol and silica gel. Further it seems that energetically effortless condensation of profens, amino acids and hydroxy acids is inseparably linked with an ability of these acids to undergo a spontaneous oscillatory chiral conversion, first described in papers [4-6]. TLC Demonstration of the phenylglycine ageing product immobile on the starting point of the chromatogram, suggesting a considerable molecular weight change Again, TLC proves to be a simple yet invaluable analytical technique which can provide a decisive experimental evidence to demonstrate that the aged samples of the investigated profens, -amino acids, and - and -hydroxy acids not only undergo chiral conversion: (+)-enantiomer  enol  (-)-enantiomer but some other more profound structural changes as well. BIURET TEST Experimental evidence of peptization of phenylglycine in 70% aq. EtOH Fig. 1. Densitograms showing concentration profiles of R-phenylglycine, S-phenylglycine, and racemic R,S-phenylglycine, depending on storage period with the respective amino acid solutions in 70% aqueous ethanol. Fig. 2. 3D densitogram of R-phenylglycine, S-phenylglycine, and the racemic and scalemic phenylglycine mixtures. Lanes 1 and 2: R-phenylglycine; lanes 3 and 4: racemic R,S-phenylglycine; lanes 5 and 6: scalemic phenylglycine (R:S, 0.75:0.25); lanes 7 and 8: scalemic phenylglycine (R:S, 0.25:0.75); lanes 9 and 10: S-phenylglycine. (a) (b) (c) Fig. 3. Test tubes showing the colour outcome of the biuret test with 70% ethanol solutions of (a) R-phenylglycine, (b) S-phenylglycine, and (c) racemic R,S-phenylglycine after storage for three days. 13C NMR spectroscopy Experimental evidence of condensation of selected carboxylic acids in solutions Ketoprofen monomer condensate Fig. 4. 100 MHz 13C NMR spectrum of L-(+)-lactic acid first dissolved and stored for ten days in pure ethanol, and then recorded in CDCl3 at 25 ºC. Fig. 5. 100 MHz 13C NMR spectrum of S-(+)-mandelic acid first stored for ten days in pure ethanol, and then recorded in CDCl3 at 25 ºC. (a) Schematic presentation of the combined process, involving chiral conversion cum condensation of profens Profens (two parallel reaction steps) (b) Fig. 6. Aliphatic range of the 13C NMR spectra for (a) ketoprofen condensate and (b) ketoprofen monomer. Methyl line at 18.26 ppm in (b) is accompanied by two additional lines at 18.61 and 18.81 ppm in (a). These new lines originate from the methyl groups in the repeating units of the condensate. The signal of methine carbon at 45.31 ppm in pure ketoprofen (b) is flanked by a new small line at 45.55 in (a) coming from the end groups. The new lines at 68.03 and 68.51 ppm in (a) originate from new quaternary carbons formed in the main chain of the polymer. α- and β-Hydroxy acids (two parallel reaction steps) α-Amino acids (two parallel reaction steps) (a) (a) (b) (b) Chiral conversion cum condensation involving enol formation Fig. 7. Aromatic range of the 13C NMR spectra for (a) ketoprofen condensate and (b) ketoprofen monomer. In spectrum (a) two small new peaks appear at 129.09 and 131.65 ppm, respectively, which can be attributed to C-2’ and C-6’, respectively, in the new molecular environment of ketoprofen condensate (as compared with pure ketoprofen, spectrum (b)). Chiral conversion cum condensation involving enol formation REFERENCES [1] A.B. Meggy, J. Chem. Soc., 1444–1454 (1956) [2] J.M. Chiaramello et al., Int. J. Astrobiol., 4, 125-133 (2005) [3] W. Wang, H. Yuan, X. Wang, Z. Yu, Adv. Space Res., 40, 1641-1645 (2007) [4] M. Sajewicz, R. Piętka, A. Pieniak, T. Kowalska, Acta Chromatogr., 15, 131-149 (2005) [5] M. Sajewicz et al., J. Liq. Chromatogr. Relat. Technol., 31, 1986-2005 (2008) [6] M. Sajewicz, M. Gontarska, D. Kronenbach, T. Kowalska, Acta Chromatogr., 20, 209-225 (2008) CONCLUSION We provide an inventive experimental evidence on condensation of selected profens, amino acids and hydroxy acids obtained, e.g., by means of thin-layer chromatography, 13C NMR spectroscopy, and biuret test. The work of two of the authors (M.G. and D.K.) was partially supported by PhD scholarships granted to them in 2008 within the framework of the ‘University as a Partner of the Economy Based on Science’ (UPGOW) project, subsidized by the European Social Fund (EFS) of the European Union.