Proteins The most important biochemicals in cells are proteins (enzymes) Protect organisms from disease Extract energy from food Move essential cellular.

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Presentation transcript:

Proteins The most important biochemicals in cells are proteins (enzymes) Protect organisms from disease Extract energy from food Move essential cellular components Responsible for vision, taste and smell Proteins are the molecular machinery of the cell. Day 1

Proteins Day 1 Proteins are made of amino acids (aa) The base structure is the same, but each a.a. has a different side chain There are 20 a.a. in humans Each has different properties Day 1

Globular Proteins Are compact, roughly spherical structures with folds and grooves Enzymes: globular proteins that speed up biochemical reactions Ex: Hemoglobin, antibodies, and hormones Carry most of the work done by cells Day 1

Globular Proteins Day 1

Fibrous Proteins Structural components of cells and tissue are made of proteins that form fibers. The fibrous proteins are the cables, girders, bricks and mortar of organisms. Day 1

Collagen Silk Fiber

Proteins Day 1 A protein has 4 structure categories: Primary: Basic linkage of amino acids Carbon of one links to N of other in chain Secondary: alpha helix and beta pleated sheet Both use hydrogen bonding Tertiary: Intermolecular bonding Salt bridge, hydrophilic/hydrophobic, polar/nonpolar, disulfur linkage Quaternary: protein-protein interaction Day 1

Primary Structure Day 1

Making a protein We are going to make a protein called Vasopressin (ADH) It is involved in kidney function, formation of memory, and can increase blood pressure The sequence of amino acids is cys-tyr-phe-gln-asn-cys-pro-arg-gly Each team will make 1 amino acid and we will link them together. Day 1

Making a protein questions Questions to ask: What happens when 1 amino acid links to another? Ans: Water is released, peptide bond formed 2. Looking at the linkage of only 9 amino acids, how complicated do you think a model of a typical protein (100s – 1000s of amino acids) would be? Day 1

2°: The Helix

2°: Pleated Sheet

Tertiary Structure Check out http://fold.it Each protein has a unique 3D shape called tertiary structure Results from the bends and folds the peptide chain makes to achieve the lowest possible energy. Check out http://fold.it Bonding is from sidechain (R group) interactions

Tertiary Structure Hydrogen Bond Salt Bridge Hydrophobic Bond Disulfide Bond

Quaternary Structure Binds several different proteins together This can be through a variety of interactions (sulfur linkages, hydrogen bonding, etc) Often a process in the body needs several proteins coordinated together to work