Framework Curation and Loading for tranSMART v1.0 - FC&L4tranSMART

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Presentation transcript:

Framework Curation and Loading for tranSMART v1.0 - FC&L4tranSMART Charlotte Raillère Sanofi R&D IS FC&L4tranSMART

Current clinical data integration Data in a tab-delimited format Word mapping file Columns mapping file Kettle Integrated data FC&L4tranSMART | 2

FC&L4tranSMART v1.0 presentation Developed by Charlotte Raillere from Sanofi R&D IS Open source (GPL v3) Audience: Curators ETL analysts Scope: Clinical data Gene expression data FC&L4tranSMART | 3

FC&L4tranSMART v1.0 presentation Aims: User-friendly Make easier curation and loading for tranSMART Load study metadata Help for creation or modification of mapping files Loading in a click data from mapping files Monitoring and quality control File viewer Delete a study from database FC&L4tranSMART | 4

Technical overview Application implemented in Java With Eclipse Rich Client Platform (RCP) Use of java libraries: Kettle API JDBC (database connection) Use of Kettle jobs developed by Recombinant FC&L4tranSMART | 5

FC&L4tranSMART functionalities Demo Application and code will be available soon in the tranSMART-ETL GitHub repository FC&L4tranSMART | 6

Thank you FC&L4tranSMART | 7