Large scale modelling of the distribution

Slides:



Advertisements
Similar presentations
Pest Risk Analysis (PRA) Stage 2: Pest Risk Assessment Pest Risk Analysis (PRA) Training.
Advertisements

WP3 Biomapping results to date WP3: NRM, CDF, CEFAS, DINARA, WCS Additional input: WP1, AquaMaps workgroup.
A novel approach to deal with spatial autocorrelation of species data: the maximum independent set* *Under the project S-PerforMA: A Species Performance.
Hannu Saarenmaa – University of Eastern Finland GEO BON, WG8 – Data Integration and Interoperability EU BON, WP2 – Data Integration and Interoperability.
Carbon Cycle and Ecosystems Important Concerns: Potential greenhouse warming (CO 2, CH 4 ) and ecosystem interactions with climate Carbon management (e.g.,
Best Model Dylan Loudon. Linear Regression Results Erin Alvey.
Climatic and biophysical controls on conifer species distributions in mountains of Washington State, USA D. McKenzie, D. W. Peterson, D.L. Peterson USDA.
Down-scaling climate data for microclimate models and forecasts Securing the Conservation of biodiversity across Administrative Levels and spatial, temporal.
BIODIVERSITY OF REEFS: INFERRING FROM SPARSE DATA Daphne G. Fautin Ecology & Evolutionary Biology Natural History Museum University of Kansas Photo by.
Jane Costa Instituto Oswaldo Cruz, Fiocruz
Geographic data: sources and considerations. Geographical Concepts: Geographic coordinate system: defines locations on the earth using an angular unit.
Accessing Biodiversity Resources in Computational Environments from Workflow Application J. S. Pahwa, R. J. White, A. C. Jones, M. Burgess, W. A. Gray,
TDWG Annual Conference 2013, Florence Hannu Saarenmaa University of Eastern Finland Integrating observation and survey data for production of the Essential.
Ecological Modeling Working Group 23 December 2013 Meeting.
Bridging Species Niche Modeling and Multispecies Ecological Modeling and Analysis Jeffery Cavner, J.H. Beach, Aimee Stewart, CJ Grady
Dimitris Koureas, PhD Natural History Museum London Linking layers of biodiversity data: Informatics challenges for the long tail research RDA - Long Tail.
Limits and Possibilities for Sustainable Development in Northern Birch Forests: AO Gautestad, FE Wielgolaski*, B Solberg**, I Mysterud* * Department of.
Open access to biodiversity data: the speciesLink experience Dora Ann Lange Canhos
Methods to improve Real-Time Visualization and Exploration of Precipitation and Temperature in Web-Cartography ICC 2009, Santiago de Chile Christophe Lienert,
NR 422- Habitat Suitability Models Jim Graham Spring 2009.
A performance evaluation approach openModeller: A Framework for species distribution Modelling.
Candidate KBA Identification: Modeling Techniques for Field Survey Prioritization Species Distribution Modeling: approximation of species ecological niche.
Eric Kortenhoeven Mentor: Dr. Neil Cobb Hooper Undergraduate Research Award (HURA)
Research Design for Collaborative Computational Approaches and Scientific Workflows Deana Pennington January 8, 2007.
Ecosystem Service Indicators, Biome-BGC and the SZTAKI Desktop Grid P. Ittzés 1, A. Cs. Marosi 2, Z. Barcza 1, F. Horváth 1 1. MTA Centre for Ecological.
OpenModeller framework for ecological niche modelling CRIA, INPE, Poli-USP.
Niches, Interactions and Movements. Calculating a Species Distribution Range Jorge Soberon M. A. Townsend Peterson.
Biodiversity and Climate Change Scenario Development for the GEOSS Interoperability Pilot Process Hannu Saarenmaa 1,5, Jeremy Kerr 2, Stefano Nativi 3,4,
PREDICTING AND UNDERSTANDING BIOGEOGRAPHIC RANGES FROM OCCURRENCE RECORDS AND CORRELATED ENVIRONMENTAL DATA J. M. Guinottte, J. D. Bartley, A. Iqbal, D.
OpenModeller A framework for biological/environmental modelling Inter-American Workshop on Environmental Data Access Campinas - SP, Brazil March 2004.
Biodiversity Data Exchange Using PRAGMA Cloud Umashanthi Pavalanathan, Aimee Stewart, Reed Beaman, Shahir Shamsir C. J. Grady, Beth Plale Mount Kinabalu.
Remote-sensing and biodiversity in a changing climate Catherine Graham SUNY-Stony Brook Robert Hijmans, UC-Berkeley Lianrong Zhai, SUNY-Stony Brook Sassan.
July 3 rd, 2014 Charlotte Germain-Aubrey ECOLOGICAL NICHE MODELING: PRACTICAL.
User scenario on Marine Biodiversity AquaMaps Pasquale Pagano National Research Council (CNR) – ISTI Italy.
Cloud Computing for Ecological Modeling in the D4Science Infrastructure A. Manzi (CERN), L. Candela, D. Castelli, G. Coro, P. Pagano, F. Sinibaldi (ISTI-CNR)
THE BIOVEL PROJECT: ROBUST PHYLOGENETIC WORKFLOWS RUNNING ON THE GRID Bachir Balech (IBBE-CNR)
The EUBrazilOpenBio-BioVeL Use Case in EGI Daniele Lezzi, Barcelona Supercomputing Center EGI-TF September 2013.
Nordic Cooperation on Biodiversity Informatics Hannu Saarenmaa NordBIN meeting Uppsala /03.
Jennifer Pannell Acknowledgements This research is funded by the Tertiary Education Committee and the Bio-Protection.
EGI Technical Forum Madrid The EUBrazilOpenBio-BioVeL Use Case in EGI Daniele Lezzi – BSC EGI Technical Forum Madrid.
Lifemapper 2.0 Using and Creating Geospatial Data and Open Source Tools for the Biological Community Aimee Stewart, CJ Grady, Dave Vieglais, Jim Beach.
Who will you trust? Field technicians? Software programmers?
Ecological Niche Modelling in the EGI Cloud Federation
‘Recording effort’ (ln+1 transformed)
(presented by Roman Gerlach)
GBIF Implementation Plan Highlights
Biodiversity and Climate Change Resource Interoperability for the GEOSS Interoperability Process Pilot Project Stefano Nativi
Expanding and Scaling Lifemapper Computations Using CCTools
Instrumental Surface Temperature Record
Brief introduction to the project
Biodiversity patterns within Parana River Basin: what we can learn from distribution models of species-level and community-level? Anderson C. Sevilha1,2,
Global Surface Water Explorer
GARP Model GARP (Genetic Algorithm for Rule-set Production)
EC FP7 - Cooperation Theme 6: Environment (incl. climate change)
MODELING THE CURRENT AND FUTURE DISTRIBUTIONS OF
Bringing Organism Observations Into Bioinformatics Networks
Rainer Froese, Kathleen Kesner-Reyes and Cristina Garilao
Species distribution modeling ideas
Climate Graphs What do they tell us?.
Climate Graphs What do they tell us?.
Department of Bioscience
Species Distribution Models
LifeWatch Cloud Computing Workshop
Delivering Conservation
Mosquito-Borne Diseases: Advances in Modelling Climate-Change Impacts
Walter Jetz, Jana M. McPherson, Robert P. Guralnick 
Chapter 3.3 – Studying Organisms in Ecosystems
SPATIAL ANALYSIS IN MACROECOLOGY
Please take out your worksheet
2.1: intro to Biodiversity
Presentation transcript:

Large scale modelling of the distribution of butterfly biodiversity in Europe using the BioVeL portal on the EGI infrastructure Yuliya Fetyukova, Hannu Saarenmaa, University of Eastern Finland, Joensuu, Finland; Matthias Obst, Sarah Bourlat, University of Gothenburg, Gothenburg, Sweden; Renato De Giovanni, Reference Center on Environmental Information, Campinas SP, Brazil; Alan Williams, Norman Morrison, University of Manchester, Manchester, UK, Francisco Quevedo, Cardiff University, Cardiff, UK 20 May 2014 University of Helsinki, EGI Community Forum 2014

Butterfly distribution modelling Species distribution modelling allows determining variation among species and their shifts over time as responds to climate and environmental changes. Butterflies are good and viable biological indicators: - well documented; - easy to identify and monitor; - butterflies and moths comprise 5% of terrestrial biodiversity; - react quickly to changes. Study case steps: - modelling historical and current species distribution; - estimate future climatic changes on species; - computation of habitat suitability shifts - compute trends in change of abundance, and estimate Essential Biodiversity Variables

Ecological niche modelling General principles of Ecological Niche Modelling (ENM) method

BioVeL Ecological niche modelling The BioVeL project is creating a set of workflows (series of data analysis steps) and Web Services for scientists to perform different analyses in the fields of ecology, taxonomy, phylogenetics and metagenomics. Data Species occurrence data of all Butterflies in Europe* 344 species occurrence data sets GBIF Data Portal http://www.gbif.org/ Environmental layers WorldClim repository http://www.worldclim.org/ Tools Data Refinement Workflow, DRF Ecological niche modelling workflow, ENM The ENM Statistical Workflow, ESW BioVeL portal data sweep function for batch processing https://portal.biovel.eu/ * Karsholt, O. & Razowski, J. (Eds.), 1996. The Lepidoptera of Europe: A distributional checklist, 380 pp, Apollo Books, Stenstrup, Denmark

GBIF species occurrence data 344 GBIF species occurrence data sets have been processed by BioVeL workflows Europe mask: decimalLatitude: [32, 72]; decimalLongitude: [-10, 40]

Species occurrence data http://www.gbif.org Erynnis tages [Dingy Skipper] georeferenced data BioSTIF: Biodiversity Spatial Temporal Interactive interface 1776 occurrences Erynnis tages: Species distribution in 1960 – 1990

Historic species distribution Erynnis tages species distribution in 1960 – 1990 Algorithm: Maximum entropy Terrestrial layers : - Annual mean temperature; - Annual precipitation; - Maximum temperature of warmest month; - Minimum temperature of coldest month. - Altitude in meters Overall coverage: 74.8% Overall intensity: 10.7%

Habitat suitability shifts by 2050 Erynnis tages: diffLayer = predictionLayer – historicalLayer Cells with colors from green to red indicate an increase and from green to blue a decrease of predicted potential for a species.

Shift vectors SHIFT vectors: 1 Erynnis tages 622.42 km 3 SHIFT vectors: 1 Erynnis tages 622.42 km 2 Spialia sertorius 424.31 km 3 Carcharodus alceae 539.04 km

Coverage and Intensity statistics increase(+)/ decrease(-) in coverage, % intensity 1960-1990, % intensity 2050, % in intensity, % Erynnis tages 74.77 84.14 9.37 10.75 10.26 -0.48 Spialia sertorius 63.45 78.69 15.23 6.05 4.71 -1.34 Carcharodus alceae 83.46 97.34 13.89 16.64 20.09 3.45 . . . 344 species Essential Biodiversity Variable of overall butterfly distribution change STACK of 344 maps

BioVeL portal & ENM wfs EGI deployment of ENM related services: - parallelized computation and hence scalable workflow execution Portal sweep data functionality: - batch processing of large amount of species http://www.biovel.eu/ https://portal.biovel.eu/

THANK YOU! http://www.gbif.org