Temporal Gene Expression Profiles after Focal Cerebral Ischemia in Mice Zhang Chengjie 1, 2, 3 ;Zhu Yanbing 2 ;Wang Song 2, 3 ;Zachory Wei Zheng 1, 2,

Slides:



Advertisements
Similar presentations
Rho family GTPases Thuy Nguyen 3/6/2012
Advertisements

Biology 107 Cellular Communication October 6, 2003.
Course Code Course Title Credits BMS 500 Responsible Conduct of Research 1 BMS 510F Biochemistry and Cell Biology 10 BMS 512 Critical Thinking 1 BMS 523A.
Biology 107 Cellular Communication October 7, 2002.
Signaling and the Signal Transduction Cascade. Question?????? External Stimulus Inside cell Nucleus, Gene transcription Other cellular effects.
CDC42 a low molecular weight GTP-binding protein originally designated G(p) and also called G25K Chromosomal location: 1p36.1 The CDC42 protein binds to.
Signal Pathways in Eukaryotic Cells Overview. Lipid Soluble Hormones.
Lecture 05 – Extracellular Signal Receptors III Lecture 05 – Extracellular Signal Receptors III BIOL 5190/6190 Cellular & Molecular Singal Transduction.
Manifestation of Novel Social Challenges of the European Union in the Teaching Material of Medical Biotechnology Master’s Programmes at the University.
By the end of this lecture you will be able to :  Classify receptors into their main superfamilies  Identify the nature & time frame of their response.
SIGNAL TRANSMISSION WITHIN THE CELL Nela Pavlíková
Function Enrichment Score Enrichment p- value % genes in group that are present # genes in list, in group type I interferon-mediated signaling pathway E
Lecture 04 – Extracellular Signal Receptors II Lecture 04 – Extracellular Signal Receptors II BIOL 5190/6190 Cellular & Molecular Singal Transduction Prepared.
Chapter 6-10 AP Biology. Define phagocytosis and pinocytosis. What does it mean for a cell to have a concentration gradient?
Weighted models for insulin Detected by scanone Detected by Ping’s multiQTL model tissue# transcripts Islet1984 Adipose605 Liver485 Gastroc404 # transcripts.
Part V Second Messengers. The first messengers being the extracellular signal molecules and the third messengers being the large protein kinases and phosphatases.
Basic Immunology University of Tabuk Faculty of Applied Medical Science Department of Medical Laboratory Technology Mr.AYMAN.S.YOUSIF MSc.Medical Microbiology.
By the end of this lecture you will be able to :  Classify receptors into their main superfamilies  Identify the nature & time frame of their response.
Passive vs. active transport Passive transport is simply transport down an electrochemical gradient until equilibrium is reached Active transport results.
Cytokines Basic introduction. Contents Definition General characteristics Types of cytokines Cytokine receptors and their types Biological functions of.
Potential therapeutic target & predictive biomarker Oncogenic IGFBP2 Sonya Song ( 宋韦 ) Beijing Shijitan Hospital Department of Oncology The Capital Medical.
Cellular macromolecule catabolism cellular macromolecule metabolism cytoplasm organization and biogenesis establishment of cellular localization intracellular.
Cytoskeleton Ribosome Protein folding mRNA processing Lipid transport Transcription Cell growth Cytoskeleton Carbohydrate metabolism Protein catabolism.
Cell communication Premedical biology. The plasma membrane fluid mosaics of lipids and proteins - consists a double layer of phospholipids and other lipids,
GO-Slim term Cluster frequency cytoplasm 1944 out of 2727 genes, 71.3% 70 out of 97 genes, 72.2% out of 72 genes, 86.1% out.
Supplementary Material 3 Gene ontology annotation of cellular component, molecular function and biological processes for both hypoxia and NAP supplemented.
Introduction to Signaling Networks Biophysics 702, February 2012 Jonathan P Butchar.
Chapter 11 Cell Communication. Cell communication signal cells communicate by direct contact or by secreting local regulators ex: growth factors, neurotransmitters.
Protein. Protein and Roles 1: biological process unknown 1.1 Structural categories 1.2 organism categories 1.3 cellular component o unlocalized.
5. Cytokine 细胞因子 王家鑫,孟明 Department of Veterinary Immunology College of Animal Science and Technology Agricultural University of Hebei.
Bruno Sopko.  Signal Transduction Pathways  Organization  Signals  Receptors ◦ Soluble Receptors ◦ Transmembrane Receptors  Enzyme Coupled Receptors.
Large black circles: query genes grey circles: interacting or related proteins Light grey line: consolidated pathways Yellow: predicted pathways Green:
Cell Communication Chapter 9. Cell Communication Communication between cells requires: ligand: the signaling molecule receptor protein: the molecule to.
Function Enrichment Score Enrichment p- value % genes in group that are present # genes in list, in group positive regulation of fever generation E
LW-AFC Effects on N -glycan Profile in Senescence-Accelerated Mouse Prone 8 Strain, a Mouse Model of Alzheimer#cod#x02019;s Disease Wang Jianhui 1, 2 ;Cheng.
Promoting Neurovascular Recovery in Aged Mice after Ischemic Stroke - Prophylactic Effect of Omega-3 Polyunsaturated Fatty Acids Cai Mengfei 1 ;Zhang Wenting.
How do you think cells communicate?
HTA exon/junction level Counts exon/junction level
Temporal Gene Expression Profiles after Focal Cerebral Ischemia in Mice Zhang Chengjie 1, 2, 3 ;Zhu Yanbing 2 ;Wang Song 2, 3 ;Zachory Wei Zheng 1, 2,
Chapter 5.6+ Cellular Biology
Chemokines: Introduction
CLARITY for High-resolution Imaging and Quantification of Vasculature in the Whole Mouse Brain Zhang Lin-Yuan 1 ;Lin #cod#x0002A;Pan 2 ;Pan Jiaji 3 ;Ma.
Diagnostic and Immunosuppressive Potential of Elevated Mir-424 Levels in Circulating Immune Cells of Ischemic Stroke Patients Li Guangwen 1, 2 ;Ma Qingfeng.
Mild Therapeutic Hypothermia Protects the Brain from Ischemia/Reperfusion Injury through Upregulation of iASPP Liu Xiangrong 1, 2, 3 ;Wen Shaohong 1, 2,
Therapeutic Potential and Cellular Mechanisms of Panax Notoginseng on Prevention of Aging and Cell Senescence-Associated Diseases Zhao Haiping 1 ;Han Ziping.
Integrin signalling Vytášek 2010.
Cellular Communication
Temporal Gene Expression Profiles after Focal Cerebral Ischemia in Mice Zhang Chengjie 1, 2, 3 ;Zhu Yanbing 2 ;Wang Song 2, 3 ;Zachory Wei Zheng 1, 2,
Therapeutic Potential and Cellular Mechanisms of Panax Notoginseng on Prevention of Aging and Cell Senescence-Associated Diseases Zhao Haiping 1 ;Han Ziping.
Promoting Neurovascular Recovery in Aged Mice after Ischemic Stroke - Prophylactic Effect of Omega-3 Polyunsaturated Fatty Acids Mengfei Cai 1 ;Wenting.
Pkc#cod#x003B4; Activation is Involved in ROS-Mediated Mitochondrial Dysfunction and Apoptosis in Cardiomyocytes Exposed to Advanced Glycation End Products.
Promoting Neurovascular Recovery in Aged Mice after Ischemic Stroke - Prophylactic Effect of Omega-3 Polyunsaturated Fatty Acids Cai Mengfei 1 ;Zhang Wenting.
Pkc#cod#x003B4; Activation is Involved in ROS-Mediated Mitochondrial Dysfunction and Apoptosis in Cardiomyocytes Exposed to Advanced Glycation End Products.
Pkc#cod#x003B4; Activation is Involved in ROS-Mediated Mitochondrial Dysfunction and Apoptosis in Cardiomyocytes Exposed to Advanced Glycation End Products.
Pkc#cod#x003B4; Activation is Involved in ROS-Mediated Mitochondrial Dysfunction and Apoptosis in Cardiomyocytes Exposed to Advanced Glycation End Products.
Wei Zuo 1 ;Feng Yan 2, 3 ;Bo Zhang 1 ;Jiantao Li 1 ;Dan Mei 1 ;
CLARITY for High-resolution Imaging and Quantification of Vasculature in the Whole Mouse Brain Zhang Lin-Yuan 1 ;Lin #cod#x0002A;Pan 2 ;Pan Jiaji 3 ;Ma.
Ch. 14 Part 6 Cell Signaling.
Transmembrane and GPCR Mohammed Mohammed Khan PhD Scholar- Department of Biochemistry King Abdul-Aziz University.
Basics of Signal Transduction
Cell Communication Chapter 11 Study the diagrams!!
Cell Communication Chapter 6.
Cell Communication.
Cell Communication.
Integrin signalling Vytášek 2009.
Presenter : Jennifer Bratt
Cell Communication CHAPTER 11.
Schematic of cellular role categories of theoretical (open bars) and identified proteins on a 2-D electrophoresis gel, pH 4–7 (black bars), in L. casei.
Exploring the Neighborhood
Milk-associated proteomes.
Presentation transcript:

Temporal Gene Expression Profiles after Focal Cerebral Ischemia in Mice Zhang Chengjie 1, 2, 3 ;Zhu Yanbing 2 ;Wang Song 2, 3 ;Zachory Wei Zheng 1, 2, 3 ;Qize Jiang Michael 3 ;Zhang Yongbo 1, 2 ;Pan Yuhualei 1, 2 ;Tao Shaoxin 1, 2 ;Li Jimei 1, 2 ;Wei Ling 1, 2, 3 ; 1 Department of Neurology, Beijing Friendship Hospital, Capital Medical University, Beijing 100050, China. ; 2 Laboratories of Stem Cell Biology and Neural Regeneration and Function Recovery, Beijing Friendship Hospital, Capital Medical University, Beijing 100050, China. ; 3 Department of Anesthesiology, Emory University School of Medicine, Atlanta, GA 30322, USA. ; Figure 2. Gene ontology enrichment analysis of the DEGs at all the time points after cerebral ischemia. A 27 significant terms of biological process were enriched at all the inspected time points and the number of DEGs in the terms were increased 1.immune response 2.immune system process 3.production of molecular mediator involved in inflammatory response 4.regulation of cell death 5.regulation of apoptotic process 6.regulation of programmed cell death 7.regulation of autophagy 8.autophagy 9.apoptotic process 10.programmed cell death 11.positive regulation of autophagy 12.positive regulation of catabolic process 13.positive regulation of cellular catabolic process 14.divalent metal ion transport 15.iron ion transport 16.ion transport 17.small GTPase mediated signal transduction 18.intracellular signal transduction 19.regulation of microtubule-based process 20.regulation of microtubule cytoskeleton organization 21.microtubule polymerization or depolymerization 22.regulation of microtubule polymerization or depolymerization 23.cell adhesion 24.biological adhesion 25.protein complex assembly 26.protein complex biogenesis 27.protein phosphorylation. B 31 significant terms in molecular function were enriched at all the different time points and the number of DEGs in these terms were increased 1. guanyl ribonucleotide binding 2. guanyl nucleotide binding 3. purine nucleotide binding 4. purine nucleoside binding 5. ribonucleoside binding 6. purine ribonucleoside binding 7. purine ribonucleoside triphosphate binding 8. purine ribonucleotide binding 9. ribonucleotide binding 10. nucleoside binding 11. nucleoside-triphosphatase activity 12. pyrophosphatase activity 13. hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 14. hydrolase activity, acting on glycosyl bonds 15. hydrolase activity 16. hydrolase activity, hydrolyzing O-glycosyl compounds 17. chemokine activity 18. chemokine receptor binding 19. cytokine activity 20. cytokine receptor binding 21. cytokine receptor activity 22. protein binding 23. calcium ion binding 24. binding 25. GTP binding 26. G-protein coupled receptor binding 27. lipid binding 28. GTPase activity 29. anion binding 30. iron ion transmembrane transporter activity 31. glutathione peroxidase activity. null,null,0(0),null-null. Doi:10.14336/AD.2017.0424