Core 1b – Engineering Data and Clinical Interface

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Presentation transcript:

Core 1b – Engineering Data and Clinical Interface Steve Pieper Isomics, Inc.

Topics DICOM Non-DICOM Clinical Data Ongoing Development Overall Goals Implementation Architecture Non-DICOM Clinical Data Ongoing Development

DICOM Goals Interoperability with Clinical Systems PACS Scanners Workstations (Navigation, Dosimetry, CAD…) Networking: Query/Retrieve/Listen (FIND, MOVE, STORE) DICOM Describes Acquisitions, not What the Data IS Interpret Acquisition Context Route to Analysis Modules Display Encapsulate Results as DICOM Objects

DICOM Implementation

DCMTK Widely Used BSD-licensed C++ DICOM ToolKit from OFFIS at University of Oldenberg CMake-ified in the Past Few Years First Passes by David Gobbi and Julien Jomier, Catalyzed by NA-MIC Supports Data Objects Networking, File I/O DCMTK-build Shared with ITKv4

Common ToolKit: CTK Over a Dozen US and European Collaborators Avoid Duplication of Effort in Medical Image Software Development High Level DICOM Classes DCMTK for Implementation Qt for OS Abstractions, Object Structures, GUI, Database DCMTK Qt CTK Slicer

Slicer DICOM Module Glue Between DICOM and Slicer Core DICOM Parsing in DCMTK/CTK Data Pre-Cached in Database MRML Manipulation in Slicer Module Logic Python Classes to Connect the Pieces Patient/Study/Series Browser Offers Slicer Interpretation of Selected Data Multiple Interpretations where DICOM Data is Ambiguous Loaded Data Retains UID Link

Anatomy of DICOM Plugins Provided by Extensions for Custom DICOM Acquisitions DICOMPlugin Methods examine load exportOptions DICOMPlugin Properties tags DICOMLoadable Properties name fileList warnings confidence

Bundled Plugins Scalar Volume Plugin Diffusion Volume Plugin Most Common: maps DICOM Series to Scalar Volume Warns for inconsistent slice spacing, sheared directions, … Diffusion Volume Plugin Routes a Diffusion Scan to DicomToNrrd (DWIConvert) Multivolume Plugin Routes Image Sequences to Load as Multivolumes Slicer Data Bundle Plugin (Work in Progress) Zipped MRML Directories in DICOM Private Tags Screenshot Image as Secondary Capture Extension Plugins to be Presented Later Today

Other Clinical Data Interfaces OpenIGTLink Tracked Instruments Real-Time Image Data Robot Controls XNAT/Midas REST API Experiment/Trial Organization Clinical History Metadata Processing Pipeline State Variables

Architecture: Review

Ongoing Development Further Testing in Clinical Environments AMIGO at BWH SlicerRT – H&N Cancer DBP QIN Enhance Functionality at Appropriate Levels of Generality DCMTK, CTK, ITK, Slicer, Extensions Incorporate Newer DICOM Standards Registration Transforms, Hanging Protocols, Structured Reports… Work with Community Seek Additional Support