Digitisation Workflows, Tools and Techniques - Whole-drawer imaging

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Presentation transcript:

Digitisation Workflows, Tools and Techniques - Whole-drawer imaging Biological Collections Digitisation in the Pacific , Symposium IV: March 2014 Nicole Fisher AUSTRALIAN NATIONAL INSECT COLLECTION WWW.CSIRO.AU

Section 1: Introduction Digitization Workflows, Tools, and Techniques - Whole-drawer imaging |Nicole Fisher

Section 1 : Introduction Examples -- Insects, pinned and slide material -- non-insects Digitization Workflows, Tools, and Techniques - Whole-drawer imaging |Nicole Fisher

Section 1 : Introduction Whole drawer imaging = High resolution images Leads to unexpected discoveries … look what you can find … Digitization Workflows, Tools, and Techniques - Whole-drawer imaging |Nicole Fisher

Drawer imaging is a fast way to expose a collection’s entire holdings Section 1 : Introduction Whole drawer imaging = contains a wealth of information Drawer imaging is a fast way to expose a collection’s entire holdings Digitization Workflows, Tools, and Techniques - Whole-drawer imaging |Nicole Fisher

Section 1 : Introduction How to go about scanning 20,000 drawers in ANIC ? Recruit volunteers / students Gather a pool of them with the right abilities Digitization Workflows, Tools, and Techniques - Whole-drawer imaging |Nicole Fisher

Section 1 : Introduction We couldn’t do it without .. Our Volunteers ... Our Students ... Our Hero’s! Digitization Workflows, Tools, and Techniques - Whole-drawer imaging |Nicole Fisher

Whole-drawer imaging Workflow Section 2: Whole-drawer imaging Workflow Digitization Workflows, Tools, and Techniques - Whole-drawer imaging |Nicole Fisher

Section 2 : Whole-drawer imaging Workflow a Developing workflows Digitization Workflows, Tools, and Techniques - Whole-drawer imaging |Nicole Fisher

Section 2 : Whole-drawer imaging Workflow Pinned Things in Trays and Drawers Working Group - Dried Insects https://www.idigbio.org/content/workflow-modules-and-task-lists Module 2B: Whole-drawer Imaging Digitization Workflows, Tools, and Techniques - Whole-drawer imaging |Nicole Fisher

Whole-drawer imaging Tools Section 3: Whole-drawer imaging Tools Digitization Workflows, Tools, and Techniques - Whole-drawer imaging |Nicole Fisher

Section 3 : Whole-drawer imaging Tools Whole-drawer imaging is an effective tool for rapid digitisation of a insect collection. On-line, Whole-drawer images as a tool can facilitate more effective - Collection Management virtual curation and public engagement Still more development of software / tools are needed for whole drawer imaging eg. annotations of drawers specimens, 3D or angled imaging for capture of label data, OCR for data capture etc Digitization Workflows, Tools, and Techniques - Whole-drawer imaging |Nicole Fisher

Section 3 : Whole-drawer imaging Tools Different whole drawer imaging tools, see : Special edition of Zookeys, 2012 – No specimen left behind: mass digitization of natural history collections doi: 10.3897/zookeys.209.3699 Digitization Workflows, Tools, and Techniques - Whole-drawer imaging |Nicole Fisher

Section 3 : Whole-drawer imaging Tools Workshop content and discussion topics will include but not be limited to: 17) the establishment of international working and interest groups for sustainable sharing of digitization practices and discoveries across nations Digitization Workflows, Tools, and Techniques - Whole-drawer imaging |Nicole Fisher

Section 2 : Whole-drawer imaging Tools International Whole-drawer Digitisation Interest Group https://www.idigbio.org/wiki/index.php/Drawer_Imaging_Group Digitization Workflows, Tools, and Techniques - Whole-drawer imaging |Nicole Fisher

Section 2 : Whole-drawer imaging Tools International Whole-drawer Digitisation Interest Group https://www.idigbio.org/wiki/index.php/Drawer_Imaging_Group Digitization Workflows, Tools, and Techniques - Whole-drawer imaging |Nicole Fisher

Section 2 : Whole-drawer imaging Tools International Whole-drawer Digitisation Interest Group https://www.idigbio.org/wiki/index.php/Drawer_Imaging_Group Digitization Workflows, Tools, and Techniques - Whole-drawer imaging |Nicole Fisher

Section 3 : Whole-drawer imaging Tools Various machines / systems used globally to capture images - Satscan, GigaPan, Dscan, Hasselblad, Invertnet Robot Hasselblad GigaPan Invertnet Robot Satscan Dscan Digitization Workflows, Tools, and Techniques - Whole-drawer imaging |Nicole Fisher

Whole-drawer imaging Techniques Section 4: Whole-drawer imaging Techniques Digitization Workflows, Tools, and Techniques - Whole-drawer imaging |Nicole Fisher

Section 4 : Whole-drawer imaging Techniques Can use Whole-Drawer Imaging techniques to : See, extract and record label data (as used in the BVP) Promote and encourage remote curation of unsorted specimens Use current technology to put more order into the collections and make it available for others Assist with image and loan requests Encourage public engagement with biological collections Expose soups, bycatch and bulk sample collections (re: Flemons) Permit morphometric analysis of at least some specimens (Johnson,L . et al, 2013) Creating virtual collections Digitization Workflows, Tools, and Techniques - Whole-drawer imaging |Nicole Fisher

Mahalo Thank you Australian National Insect Collection Nicole Fisher e nicole.fisher@csiro.au w www.csiro.au/anic CSIRO Ecosystem Sciences