Pathway Collages User-defined pathway diagrams Customizable Optionally painted with high-throughput data Define via SmartTable or select pathways directly Export to high-resolution PNG image file Example: http://biocyc.org/group?id=biocyc14-61-3670184769

Pathway Collage Operations Reposition pathways or metabolite nodes Show connections between same metabolite in different pathways Merge nodes for same metabolite in different pathways Delete nodes, add side compounds, add pathways Edit text Customize colors, shapes, font sizes Highlight nodes, edges of interest Overlay omics data

Cellular Dashboard (coming soon) Omics data displayed as set of hierarchically organized bar graphs Drill down from general functional categories to individual genes (metabolites, etc.) See at a glance what metabolic and other processes are most impacted in your omics experiment

Dashboard – Main Window

Dashboard – Amino Acid Biosynthesis

Dashboard – Individual Gene Level

Show Pathway, Operons, Data Table

Show and Filter by Transcription Factor

Dashboard – Other Operations Customize Hide, rename, reorder categories Add graph for pathway, pathway class, GO term, enumerated gene set Change vertical scale Magnification Log scale Defined upper, lower bounds Sort by various criteria Group and average replicate sets Show Sums for all objects in a category Enrichment Analysis