Molecular Phylogenetics and Historical Biogeography among Salamandrids of the “True” Salamander Clade: Rapid Branching of Numberous Highly Divergent Lineages.

Slides:



Advertisements
Similar presentations
Biogeography Chapter 11 History of Lineages and Biotas.
Advertisements

Reading Phylogenetic Trees Gloria Rendon NCSA November, 2008.
Phylogeny and the Tree of Life
Introduction to Phylogenies
 Aim in building a phylogenetic tree is to use a knowledge of the characters of organisms to build a tree that reflects the relationships between them.
1 General Phylogenetics Points that will be covered in this presentation Tree TerminologyTree Terminology General Points About Phylogenetic TreesGeneral.
Phylogeny and Systematics
BIO2093 – Phylogenetics Darren Soanes Phylogeny I.
Reading Phylogenetic Trees
Review of cladistic technique Shared derived (apomorphic) traits are useful in understanding evolutionary relationships Shared primitive (plesiomorphic)
Bell Work Dogs of a certain breed can have black fur or white fur. Black fur is dominant, but the breeder only wants puppies with white fur. Cross two.
Chapter 2 Opener How do we classify organisms?. Figure 2.1 Tracing the path of evolution to Homo sapiens from the universal ancestor of all life.
Phylogeny & The Tree of Life. Phylogeny  The evolutionary history of a species or group of species.
Multiple Sequence Alignments and Phylogeny.  Within a protein sequence, some regions will be more conserved than others. As more conserved,
Molecular phylogenetics
Analysis of Mitochondrial DNA from Chimpanzees in Tanzania Timothy Comar, April Bednarski, and Douglas Green.
Species boundaries, phylogeography and conservation genetics of the red- legged frog (Rana aurora/drytonii) complex Presented by: Chris Burton & Matt Meyer.
Testing alternative hypotheses. Outline Topology tests: –Templeton test Parametric bootstrapping (briefly) Comparing data sets.
AP Biology Discussion Notes Wednesday 11/12/2014.
Ayesha M.Khan Spring Phylogenetic Basics 2 One central field in biology is to infer the relation between species. Do they possess a common ancestor?
Chapter 26 Phylogeny and the Tree of Life
Tree Terminologies. Phylogenetic Tree - phylogenetic relationships are normally displayed in a tree-like diagram (phylogenetic tree/cladogram) - a cladogram.
Section 2: Modern Systematics
Phylogeny and the Tree of Life
Phylogeny and Systematics
Introduction to Bioinformatics Resources for DNA Barcoding
SUPPORT and RESAMPLING
Systematics and Phylogenetic Revolution
Phylogeny & the Tree of Life
Phylogeny and the Tree of Life
Sierra M. Love Stowell & Andrew P. Martin Student Figures
Section 2: Modern Systematics
Warm-Up Contrast adaptive radiation vs. convergent evolution? Give an example of each. What is the correct sequence from the most comprehensive to least.
Warm-Up Contrast adaptive radiation vs. convergent evolution? Give an example of each. What is the correct sequence from the most comprehensive to least.
Agenda 10/8 Seashell Sort Phylogeny Lecture Phylogenetics Pracice
Evolutionary history of related organisms
Warm-Up Contrast adaptive radiation vs. convergent evolution? Give an example of each. What is the correct sequence from the most comprehensive to least.
Primate evolution – in and out of Africa
Warm-Up Contrast adaptive radiation vs. convergent evolution? Give an example of each. What is the correct sequence from the most comprehensive to least.
Phylogeny and the Tree of Life
Summary and Recommendations
Warm-Up Contrast adaptive radiation vs. convergent evolution? Give an example of each. What is the correct sequence from the most comprehensive to least.
Parsimony is Computationally Intensive
Phylogeny and the Tree of Life
Phylogeny and the Tree of Life
Phylogeny and the Tree of Life
Phylogeny and the Tree of Life
Phylogeny and the Tree of Life
Phylogeny and Systematics
Chapter 20 Phylogenetic Trees.
Chapter 20 Phylogenetic Trees. Chapter 20 Phylogenetic Trees.
Reading Phylogenetic Trees
Chapter 25 – Phylogeny & Systematics
Primate evolution — in and out of Africa
Phylogeny and the Tree of Life
Warm-Up Contrast adaptive radiation vs. convergent evolution? Give an example of each. What is the correct sequence from the most comprehensive to least.
Phylogeny and Systematics (Part 6)
Phylogeny and the Tree of Life
Chapter 26- Phylogeny and Systematics
Warm-Up Contrast adaptive radiation vs. convergent evolution? Give an example of each. What is the correct sequence from the most comprehensive to least.
Phylogeny and the Tree of Life
Warm-Up Contrast adaptive radiation vs. convergent evolution? Give an example of each. What is the correct sequence from the most comprehensive to least.
Phylogenetic Trees Jasmin sutkovic.
Chapter 26 Phylogeny and the Tree of Life
Chapter 20 Phylogeny and the Tree of Life
Summary and Recommendations
But what if there is a large amount of homoplasy in the data?
Chapter 18: Evolution and Origin of Species
1 2 Biology Warm Up Day 6 Turn phones in the baskets
Phylogeny and the Tree of Life
Presentation transcript:

Molecular Phylogenetics and Historical Biogeography among Salamandrids of the “True” Salamander Clade: Rapid Branching of Numberous Highly Divergent Lineages in Mertensiella luschani Associated with the Rise of Anatolia David W. Weisrock, J. Robert Macey, Ismail H. Ugurtas, Allan Larson, and Theodore J. Papenfuss

Questions 1. Why is there such diversity within a relative small amount of space of the Mertensiella luschani in southwestern Turkey (Anatolia)?

Questions Need a comparison group: Mertensiella caucasica 2. Is Mertensiella really a monophyletic group?

“True” Salamanders

Hypotheses Mertensiella is not a monophyletic group. Two separate vicariant events occurred between Anatolia and Europe.

Methods Collected genomic DNA from liver or muscle from the “true” salamanders and the out group (newts) Amplified the genomic DNA, purified/isolated and re-amplified. Aligned DNA Sequences: 20 mitochondrial DNA sequences -Non-alignable sequences were omitted because of considerable length variation

Analytical Methods Estimated parsimonious phylogenetic trees Bootstrap resampling Decay indices Wilcoxon signed-ranks test (examine the statistical significance of the overall shortest tree) Four-taxon test of Felsenstein (examine statistical significance of phylogenetic groupings)

Single most parsimonious tree generated

Phylogram of the single most parsimonious tree

Results The overall shortest depicts the “true” salamanders as monophyletic relative to the out group taxa sampled. When this tree is compared to the shortest alternative tree showing the “true” salamanders as a nonmonophyletic group, this alternative is rejected by the Wilcoxon signed-ranks test using the two-tailed test.

Results The genus Mertensiella is not resolved as a monophyletic group in the overall shortest tree. When the overall shortest tree is compared to the shortest alternative trees depicting a monophyletic Mertensiella, the alternative trees are rejected by the Wilcoxon signed-ranks test using the two tailed test.

Results The overall shortest tree places M. luschani as the sister taxon to the genus Salamandra. When this tree is compared to the shortest alternative tree in which M. luschani and Salamandra do not form a monophyletic group, this alternative tree is rejected by the Wilcoxon signed-ranks test using the two tailed test.

Results The overall shortest tree places M. caucasica and Chioglossa as sister taxa. When this tree is compared to the shortest alternative trees in which these taxa do not form a monophyletic group, these alternatives are rejected by the Wilcoxon signed-ranks test using the one tailed test.

Results Three well-supported clades within M. luschani and three additional lineages are recovered with only weak support. The four-taxon test of Felsenstien showed that there is strong evidence suggesting hard polytomy. -hard polytomy=simultaneous branching from a common ancestral lineage -soft polytomy=successive branching of lineages that have relatively short intervals of time between them

Discussion

Molecular clock

Biogeographical event 1 Represents plausible geographical evidence for the divergence of Chioglossa lusitanica and Mertensiella caucasica

Biogeographical event 2 Represents plausible geographical evidence for the divergence of genus Salamandra and Mertensiella luschani

Genetic Diversity in Tectonic Collision Zones The southern margin of Anatolia represents a collision zone between ancient Gondwanan tectonic fragments that are sandwiched between Laurasian plates to the north and the Gondwanan fragment of Arabia to the south. The intense Miocene mountain building in Anatolia results from the Arabian collision. The high levels of genetic diversity detected in M. luschani across a narrow region (;350 km) of this tectonic collision zone may represent a common pattern in geologically active areas. Conservation efforts should be focused in collision zones for two reasons: (1) tectonic plates introduce new faunal elements, potentially increasing diversity, and (2) mountain building in suture zones is important in causing high levels of genetic diversity among faunal elements. Future studies assessing genetic variation in taxa that occur in geologically active areas will be important in testing this hypothesis.

Questions?