Dankook Univ. Depart of Physics Solid State Physics Lab. Choi hye jin

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Presentation transcript:

Dankook Univ. Depart of Physics Solid State Physics Lab. Choi hye jin Introduction openDX Dankook Univ. Depart of Physics Solid State Physics Lab. Choi hye jin

All pictures from www.opendx.org Free & Powerful 3D visualization tool www.opedx.org All pictures from www.opendx.org

Structure of an OpenDX Module Inputs Outputs

Steps to Creating a Visualization Get the data Formulate a scientific strategy. Import the data Create a simple OpenDx network Incrementally embellish the network. Create the output.

The opendx main menu Get into Data Prompter program Run an openDX without seeing the network Run an openDX network and be able to edit the network Create a new opendx network Run the internal openDX tutorial Load, and be able to edit, one of the OpenDX sample network

Nine Categories of Modules Debugging Annotation Realization Rendering Structuring Transfor mation Import & Export Special Interactor

Atom – position.net

FileSelector /. 현재 디렉토리에서의 모든 dx 파일 /.. 상위폴더에서의 모든 dx 파일

Import Active panel : input module

Glyph Input - data Type : sphere . Rocket. Shape Scale : size. Ratio : size between smallest and largest glyphs

Bond – Tube & Ribbon Line : import file Diameter : bond scale

Bond – Tube & Ribbon Ribbon tube

Switch

Selector & Switch

ClipPlane Object : atom position Point : cliping plane point (center of object) Normal : plane normal vector (1 0 0 ) (0 1 0) (0 0 1)

Transmitter & Receiver

Density - MapToPlane

MapToPlane z ∙ z y x y x

colormap

color Contour line – color MapToPlane – color , colormap, colorbar

colorbar image 1 1

Translate Translation : [ 0 0 0 ] original state [ 0 10 0 ] translate state

RubberSheet

IsoSurface page

Isosurface

ShowConnections

Valuelist

Format

Caption IsoSurface : [5 , 5.1 , 5.2] Valuelist→Format→Caption

Gradient_page

Gradient & Sample

Total image page Receiver Input tab : Ctrl + A

Animation_page

Sequencer

Autoaxes

View control

Regular grid – data file

Regular grid

Wavefuction ( Import X) Wavefuction compute Box compute

Quantum-number n = 3 l = 2 m = 3

Compute

Atom 1s n=1 , l=0, m=0

Atom 2s, 2p n=2 , l=0, m=0 n=2 , l=1, m=0 n=2 , l=1, m=1

Atom 3s,3p n=3 , l=0, m=0 n=3 , l=1, m=0 n=3 , l=1, m=1

Atom 3d n=3 , l=2, m=0 n=3 , l=2, m=1 n=3 , l=2, m=2