Kin Wah Fung, MD, MS, MA National Library of Medicine, NIH

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Presentation transcript:

Kin Wah Fung, MD, MS, MA National Library of Medicine, NIH Achieving Logical Equivalence between SNOMED CT and ICD-10-PCS Surgical Procedures S14: Evaluating SNOMED-CT and Its Use to Achieve Semantic Interoperability Kin Wah Fung, MD, MS, MA National Library of Medicine, NIH

Disclosure I and my co-authors have no relevant relationships with commercial interests to disclose. AMIA 2017 | amia.org

Background ICD-10-PCS is a brand-new procedure classification system created by U.S. Centers for Medicare and Medicaid Services (CMS) In the US, ICD-10-PCS replaced ICD-9-CM procedure codes since Oct 2015 to encode hospital-based medical procedures for administrative and reimbursement purposes ICD-10-PCS is also used in other countries e.g. Belgium, Spain, Portugal AMIA 2017 | amia.org

ICD-10-PCS Much more granular compared to ICD-9-CM procedure codes ICD-9-CM 3,800 codes ICD-10-PCS > 75,000 codes Multi-axial structure - the seven characters in the code correspond to the seven axes, each describing a particular aspect of the procedure

ICD-10-PCS index AMIA 2017 | amia.org

ICD-10-PCS tables Endoscopic hysterectomy = 0UT94ZZ

ICD-10-PCS map project group Formed in 2015 under SNOMED International (formerly International Health Terminology Standards Development Organisation, IHTSDO) Representatives from Belgium, Spain, Portugal and U.S. To explore ways to map between SNOMED CT and ICD-10-PCS. Expected benefits of the map: Improve SNOMED CT and ICD-10-PCS coding efficiency and accuracy Promote re-use of clinical data for administrative, epidemiologic and statistical purposes Facilitate integration of clinical and administrative data to support data analytics

Mapping approaches explored Lexical mapping ICD-10-PCS index ICD-9-CM procedure codes index UMLS synonymy General Equivalence Maps (ICD-9-CM to ICD-10-PCS) Concept model alignment AMIA 2017 | amia.org

Concept model mapping prerequisites SNOMED CT concept model is expressive enough to represent the meaning of ICD-10-PCS codes Logical definitions of SNOMED CT concepts are available for equivalence checking Existing pre-coordinated SNOMED CT content Post-coordination This study aims to explore the feasibility of concept model mapping AMIA 2017 | amia.org

Modeling of procedures in SNOMED CT 24 attributes allowed (excluding Is-A relationships) 10 most commonly used attributes: Attribute % concepts with attribute Method 100.00% Procedure site - direct 85.23% Direct morphology 28.60% Procedure site - indirect 13.27% Using device 13.14% Procedure site 8.80% Revision status 4.89% Using access device 4.48% Access 4.30% Direct device 4.19% AMIA 2017 | amia.org

Corresponding SNOMED CT attributes ICD-10-PCS axis % of ICD-10-PCS codes Corresponding SNOMED CT attributes % of SNOMED CT concepts with attributes 1. Section 100% NA 2. Body system Procedure site Procedure site – direct Procedure site – indirect 97.1% 3. Root operation Method 4. Body part 5. Approach Access Using access device 8.7% 6. Device 54.5% Using device Direct device Procedure device Direct substance Using substance 23.5% 7. Qualifier 17.2% Procedure site – direct* Has intent 8.9% AMIA 7. 017 | amia.org

Methods List of ICD-10-PCS codes with usage frequencies obtained from the data warehouse of Nebraska Medicine Medical Center – a 600 bed acute care facility with over 1,000 physicians covering all major sub-specialties Focus on top 100 medical and surgical procedures (first digit of ICD-10-PCS code = 0) Two authors (both MDs) independently match the ICD-10-PCS codes to SNOMED CT concepts by Meaning match - based on the SNOMED CT fully-specified names Logical match – based on the logical definition Results collated and differences discussed until consensus is reached, or a third author casts a deciding vote AMIA 2017 | amia.org

Results: Exact meaning match, full logical equivalence (1 case) ICD-10-PCS: Occlusion of Bilateral Fallopian Tubes, Open Approach (0UL70ZZ) SNOMED CT: Open bilateral occlusion of fallopian tubes (176936004) AMIA 2017 | amia.org

Exact meaning match, close logical equivalence (24 cases) ICD-10-PCS: Resection of Appendix, Percutaneous Endoscopic Approach (0DTJ4ZZ) SNOMED CT: Laparoscopic appendectomy (6025007) Strictly speaking, not exact logical equivalence because Missing Approach = Percutaneous approach Body site should be Entire appendix, since Resection in ICD-10-PCS means removal of whole body part or organ However, no ambiguity caused by missing attributes - could be added back algorithmically e.g. All laparoscopic procedures → add Approach = Percutaneous approach All biopsies → add Has intent = Diagnostic intent AMIA 2017 | amia.org

Exact meaning match, partial logical equivalence (7 cases) ICD-10-PCS: Bypass Stomach to Jejunum, Percutaneous Endoscopic Approach (0D164ZA) SNOMED CT: 307195003 Laparoscopic gastroenterostomy (307195003) AMIA 2017 | amia.org

Exact meaning match, partial logical equivalence (7 cases) ICD-10-PCS: Bypass Stomach to Jejunum, Percutaneous Endoscopic Approach (0D164ZA) SNOMED CT: 307195003 Laparoscopic gastroenterostomy (307195003) AMIA 2017 | amia.org

Partial meaning match, full representation possible by post-coordination (57 cases) ICD-10-PCS: Dilation of Left Ureter with Intraluminal Device, Via Natural or Artificial Opening Endoscopic (0T778DZ) SNOMED CT: Insertion of stent into ureter (428817001) AMIA 2017 | amia.org

Partial meaning match, full representation possible by post-coordination (57 cases) ICD-10-PCS: Dilation of Left Ureter with Intraluminal Device, Via Natural or Artificial Opening Endoscopic (0T778DZ) SNOMED CT: post-coordinated expression AMIA 2017 | amia.org

Partial meaning match, full representation not possible by post-coordination with current SNOMED CT concept model and content (11 cases) Beyond SNOMED CT logical model – cardinality Bypass Coronary Artery, Two Arteries from Aorta with Autologous Venous Tissue, Open Approach (021109W) Missing body part concept Insertion of Monitoring Device into Upper Artery, Percutaneous Approach (03HY32Z) ‘Upper artery’ in ICD-10-PCS refers to any artery above diaphragm – no corresponding body part concept in SNOMED CT Missing surgical method concept Extraction of Abdomen Skin, External Approach (0HD7XZZ) ‘Extraction’ in ICD-10-PCS refers to removal by any means other than surgical excision – no corresponding ‘non-surgical removal’ concept in SNOMED CT AMIA 2017 | amia.org

25% 6% 57% 12% SNOMED CT concept model Existing SNOMED CT concepts Complete logical definitions ICD-10-PCS codes 25% 6% 57% 12% Logical mapping not possible with existing concept model Logical mapping to existing concepts Logical mapping possible if existing definitions become complete Logical mapping possible by post-coordination

Conclusion SNOMED CT concept model is expressive enough to support logical mapping to ICD- 10-PCS – 88% of ICD-10-PCS procedures can be represented fully Exact meaning match can be found for about one-third of commonly used ICD-10- PCS codes. Among these, 78% of these SNOMED CT concepts are defined adequately to support logical mapping, the rest will require additional editing to make their definitions more complete. This will not only benefit mapping but useful for other description logic-based computations e.g., equivalence checking, subsumption calculation Even non-exact logical matches (one-to-many matches) can be useful SNOMED CT: Total splenectomy (174776001) can be mapped to 2 ICD-10-PCS codes Resection of Spleen, Percutaneous Endoscopic Approach (07TP4ZZ) Resection of Spleen, Open Approach (07TP0ZZ) This can be used to narrow down the search for mappers, or to prompt additional input from clinicians during data entry AMIA 2017 | amia.org

Email me at: kfung@mail.nih.gov Thank you! Email me at: kfung@mail.nih.gov