Fig. 5. A GC content and het/nonref-hom ratio relationship for exome regions. B GC content and het/nonref-hom ratio relationship for intron regions. C.

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Fig. 5. A GC content and het/nonref-hom ratio relationship for exome regions. B GC content and het/nonref-hom ratio relationship for intron regions. C GC content and het/nonref-hom ratio relationship for intergenic regions. D GC content and het/nonref-hom ratio relationship for non-coding RNA regions From: Genome measures used for quality control are dependent on gene function and ancestry Bioinformatics. 2014;31(3):318-323. doi:10.1093/bioinformatics/btu668 Bioinformatics | © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com

Fig. 2. A het/nonref-hom ratio for exome regions Fig. 2. A het/nonref-hom ratio for exome regions. B het/nonref-hom ratio for intron regions. C het/nonref-hom ratio for intergenic regions. D het/nonref-hom ratio for non-coding RNA regions. E het/nonref-hom ratio for miRNA regions From: Genome measures used for quality control are dependent on gene function and ancestry Bioinformatics. 2014;31(3):318-323. doi:10.1093/bioinformatics/btu668 Bioinformatics | © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com

Fig. 1. A Ti/Tv ratio for exome regions Fig. 1. A Ti/Tv ratio for exome regions. B Ti/Tv ratio for intron regions. C Ti/Tv ratio for intergenic regions. D Ti/Tv ratio for non-coding RNA regions. E Ti/Tv ratio for miRNA regions. The variation for Ti/Tv is higher than other regions because much fewer SNPs are in miRNA regions From: Genome measures used for quality control are dependent on gene function and ancestry Bioinformatics. 2014;31(3):318-323. doi:10.1093/bioinformatics/btu668 Bioinformatics | © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com

Fig. 4. A GC content and Ti/Tv ratio relationship for exome regions Fig. 4. A GC content and Ti/Tv ratio relationship for exome regions. B GC content and Ti/Tv ratio relationship for intron regions. C GC content and Ti/Tv ratio relationship for intergenic regions. D GC content and Ti/Tv ratio relationship for non-coding RNA regions From: Genome measures used for quality control are dependent on gene function and ancestry Bioinformatics. 2014;31(3):318-323. doi:10.1093/bioinformatics/btu668 Bioinformatics | © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com

Fig. 3. A Ti/Tv ratio for synonymous SNPs Fig. 3. A Ti/Tv ratio for synonymous SNPs. B Ti/Tv ratio for non-synonymous SNPs. C het/nonref-hom ratio for synonymous SNPs. D het/nonref-hom ratio for non-synonymous SNPs From: Genome measures used for quality control are dependent on gene function and ancestry Bioinformatics. 2014;31(3):318-323. doi:10.1093/bioinformatics/btu668 Bioinformatics | © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com